| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0040 |
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| Symbol | |
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| ID | 7973998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 41879 |
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| End bp | 43729 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644790642 |
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| Product | protein of unknown function DUF1446 |
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| Protein accession | YP_002941969 |
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| Protein GI | 239813059 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.479807 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCGA GCAGCAACAA CAGCAGCGAA CGCATCGTGC GCATCGGCGG CGCCTCGGGC
TTTTGGGGCG ACAGCAGCGT GGGCGCGCCG CAGCTCGTGG CCAGCGGGCA GATCGACTAC
CTGGTGTTCG ACTACCTGGC CGAGCTCACG ATGTCGATCC TCGCGGGCGC GCGGCTCAAG
AAACCGGAGC TCGGCTACGC CACCGACTTC GTCTCCATCG CGATGAAGGC GGTGCTGAAG
GATGTCGTGC AGCAGGGCAT CCGCGTGGTG AGCAATGCGG GCGGCGTCAA TCCGCAGGGC
TGCGCCGATG CACTGGCCGC GCTCGCGGCC GAGCAGGGCG TCGCGCTGAA GATCGCGGTG
GTCAGCGGCG ACGACGTCTC GCCGCTGCTG CCGCAGTTGC GCCAGCAGCA GCCTCCGGTG
CGCGAACTGC AGAGCGGCGC GCCGCTGCCC GGGCGCGTGC TCACGGCCAA TGCCTACCTG
GGCGCACGGC CGATCCAGGC CGCGCTCGAT GCAGGCGCGC AGGTGGTCAT CACCGGCCGC
TGCGTCGATT CGGCCGTGAC GCTCGGCGTG CTGATGCATG CGTTCGGCTG GCAACCCGGC
GACCACGACC TGCTCGCAGC CGGCAGCCTC GCGGGCCACA TCATCGAATG CGGCTGCCAG
GCCACCGGCG GCCTGCACAC CGACTGGGAC ACCGTGCCCG ACTGGCCGAA CATCGGCTAT
CCGATCGTCG AGTGCAGCGC CGATGGCGGC TTCATCGTCA CCAAGCCCGC GGGCACCGGC
GGCAAGCTCA CGCCGGCTGT GGTGGGCGAG CAATTGCTCT ACGAGATCGG CGATCCGTCG
GCCTACCTGC TGCCCGACGT GGTGGCCGAC TTCACGCAGG TGCGCATCGC GCAGGCCGGC
GAGCACCGCG TGCGCGTGCA TGGCGCGCGG GGCCGCGCGC CCACCGCGAG CTACAAGGTC
TGCGCCACCT ATGCAGAGGG CTTCAAGACC GCGGCGCAGC TCACCATCGT CGGCTTCGAC
GCCGTGGCCA AGGCTAGGCG CACCGGCGAG GCGATCCTTG CGCGCACCGG TGCGCTGTTC
GACCAGCAAG GCCTTGGTCC CTACAGCGGC ACGCAGCTCG AAGTGCTCGG CGCCGAATCC
TGCTATGGCC CGCATGCGCA GGCCCTGCAG ACGCGCGAGG CCGTGCTGCG GCTCGCGGTC
ACGCATGCGC ACAAGGAGGC GCTCGAACTC TTCGCGCGCG AAGTGGCACC GGCCGGCACC
TCGTGGGCGC CGGGCACCAC GGGCGCGGGC GGGCGGCCCT CGGTAGCGGC GTCGATCCGG
CAGTACGCCT TCCTGCTCGA CAAGACGATG GTCGAAGCGC GCGTGAGCAT CGACGGACAG
CACATCGAGA TCCCGCGCGA CGCCGTGGTT GCGGCGGCGG CCGATGCGCC TTCGCCACGA
CAGGCGGCCG TCGATGCGAA TGCCGTGGCC TCCGTCGATG CCGACGCCAT CGAAGTGCCG
CTCATCCGCC TGGCCTGGGC CCGCAGCGGT GACAAGGGCG ACACCTCGAA CATCGGCGTC
ATCGCGCGCC ACCCTGCCCT GCTGCCGCTG TTGCGCAGCC AGCTCAGCGA AGCGCGCGTG
GCCGAATGGC TCGCGCACCT CGTCAAGGGA CCGGTGACGC GCTACGAAGT GCCGGGCATC
GGCGCCTTCA ACTTCGTCTG CGAGCAGGCG CTCGGCGGCG GCGGCATGGC CTCGCTGCGC
AACGATCCGC TCGGCAAGGG CATGGGGCAG ATCCTGCTTG CGATGCCCGT GCGCGTGAGC
GCGGAGCTGC TCGCGCTCGC AGGGTCCGAT CGCAGCGCCC TGAACGCCTA G
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| Protein sequence | MNASSNNSSE RIVRIGGASG FWGDSSVGAP QLVASGQIDY LVFDYLAELT MSILAGARLK
KPELGYATDF VSIAMKAVLK DVVQQGIRVV SNAGGVNPQG CADALAALAA EQGVALKIAV
VSGDDVSPLL PQLRQQQPPV RELQSGAPLP GRVLTANAYL GARPIQAALD AGAQVVITGR
CVDSAVTLGV LMHAFGWQPG DHDLLAAGSL AGHIIECGCQ ATGGLHTDWD TVPDWPNIGY
PIVECSADGG FIVTKPAGTG GKLTPAVVGE QLLYEIGDPS AYLLPDVVAD FTQVRIAQAG
EHRVRVHGAR GRAPTASYKV CATYAEGFKT AAQLTIVGFD AVAKARRTGE AILARTGALF
DQQGLGPYSG TQLEVLGAES CYGPHAQALQ TREAVLRLAV THAHKEALEL FAREVAPAGT
SWAPGTTGAG GRPSVAASIR QYAFLLDKTM VEARVSIDGQ HIEIPRDAVV AAAADAPSPR
QAAVDANAVA SVDADAIEVP LIRLAWARSG DKGDTSNIGV IARHPALLPL LRSQLSEARV
AEWLAHLVKG PVTRYEVPGI GAFNFVCEQA LGGGGMASLR NDPLGKGMGQ ILLAMPVRVS
AELLALAGSD RSALNA
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