| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0038 |
|---|
| Symbol | |
|---|
| ID | 7973996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 40183 |
|---|
| End bp | 40668 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644790640 |
|---|
| Product | Endoribonuclease L-PSP |
|---|
| Protein accession | YP_002941967 |
|---|
| Protein GI | 239813057 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.491451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGCA TCGAACAGCG ACTCGCCACG CTCGGTCTCG TGCTGCCGCC GCCGGTCACG
CCGCCGCCCG GCGTGGTGCT GCCTTTCACC TTCGTGCGCA TCGCCGGGCG CCGCGCCATC
ATCTCGGGCC ACGGCCCGCT GAATGCCGAC GGCACCATTG CCGCGCCGCT CGGCAAGCTG
GGCCGCGAGC TGACGGTCGA GCAGGGCTAC GCGGCGGCGC GGCTCACCGC GCTGGCGATG
CTCGGCAGCC TGCAGCGCGC GCTCGGCGAC CTCGACCGCA TCACCGCCTG GACGCGCGTG
TTCGGCATGG TGGCTTCGGC ACCGGGCTTC GACAGGCAGC CCGCCGTCAT CAACGGCTTC
TCGGACCTCG TGCTCGAGCT CTTCGGCCCG GAGATCGGCG CGCACGCACG CAGTGCCGTC
GGCATGGCGG AGCTTCCGTT CAACCTCCCG GTCGAGATCG AAGGCGAAGT GGAGTTCGGG
GATTAA
|
|---|
| Protein sequence | MARIEQRLAT LGLVLPPPVT PPPGVVLPFT FVRIAGRRAI ISGHGPLNAD GTIAAPLGKL
GRELTVEQGY AAARLTALAM LGSLQRALGD LDRITAWTRV FGMVASAPGF DRQPAVINGF
SDLVLELFGP EIGAHARSAV GMAELPFNLP VEIEGEVEFG D
|
|---|
| |