| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_28290 |
|---|
| Symbol | cspD |
|---|
| ID | 7761734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 2915588 |
|---|
| End bp | 2915866 |
|---|
| Gene Length | 279 bp |
|---|
| Protein Length | 92 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643805708 |
|---|
| Product | cold shock protein, CspD |
|---|
| Protein accession | YP_002799976 |
|---|
| Protein GI | 226944903 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1278] Cold shock proteins |
|---|
| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAGCG GCAAGGTCAA ATGGTTCAAC AACGCCAAGG GATACGGATT CATCGTGGCA
GATGGCCGCG ACGAAGACTT GTTCGCCCAC TACTCGGCAA TTCAGATGGA TGGCTACAAG
ACCTTGAAGG CCGGTCAGGC AGTAACTTTC GAGCTGCTGC AGGGCCCGAA AGGCCTCCAT
GCAATCAATA TCCATCCCTG CCCAGCGCCG ATCGAGAATT CGGCCAAGCT CGGCCTGGCA
CAACCCTCGT CCCTTACGGA CATTGCCGGT ACGCTATAG
|
|---|
| Protein sequence | MLSGKVKWFN NAKGYGFIVA DGRDEDLFAH YSAIQMDGYK TLKAGQAVTF ELLQGPKGLH
AINIHPCPAP IENSAKLGLA QPSSLTDIAG TL
|
|---|
| |