More than 300 homologs were found in PanDaTox collection
for query gene Avin_28290 on replicon NC_012560
Organism: Azotobacter vinelandii DJ



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012560  Avin_28290  cold shock protein, CspD  100 
 
 
92 aa  192  2e-48  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2395  cold-shock DNA-binding protein family protein  76.54 
 
 
89 aa  130  6e-30  Pseudomonas mendocina ymp  Bacteria  normal  0.80282  normal  0.0844989 
 
 
-
 
NC_009656  PSPA7_2585  cold shock domain-containing protein CspD  90.62 
 
 
90 aa  126  9.000000000000001e-29  Pseudomonas aeruginosa PA7  Bacteria  normal  0.169981  n/a   
 
 
-
 
NC_008463  PA14_30200  cold-shock protein CspD  90.62 
 
 
90 aa  126  9.000000000000001e-29  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3355  cold shock domain family protein  75.32 
 
 
89 aa  119  9.999999999999999e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0196853  n/a   
 
 
-
 
NC_010501  PputW619_3414  cold-shock DNA-binding domain-containing protein  69.05 
 
 
83 aa  119  1.9999999999999998e-26  Pseudomonas putida W619  Bacteria  normal  normal  0.0959818 
 
 
-
 
NC_010322  PputGB1_3615  cold-shock DNA-binding domain-containing protein  84.38 
 
 
84 aa  117  7e-26  Pseudomonas putida GB-1  Bacteria  decreased coverage  0.00635954  normal 
 
 
-
 
NC_002947  PP_4010  cold-shock protein CspD  79.69 
 
 
88 aa  113  1.0000000000000001e-24  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0979489 
 
 
-
 
NC_009512  Pput_1823  cold-shock DNA-binding domain-containing protein  78.12 
 
 
88 aa  112  2.0000000000000002e-24  Pseudomonas putida F1  Bacteria  normal  0.565643  normal  0.0615675 
 
 
-
 
NC_008740  Maqu_1759  cold-shock DNA-binding domain-containing protein  66.22 
 
 
103 aa  106  8.000000000000001e-23  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3185  cold-shock protein, DNA-binding  64.94 
 
 
92 aa  105  2e-22  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.937654  normal  0.149852 
 
 
-
 
NC_011138  MADE_02364  stress response protein CspD  73.44 
 
 
72 aa  102  1e-21  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.000164326  n/a   
 
 
-
 
NC_009457  VC0395_A0712  cold shock-like protein CspD  63.64 
 
 
76 aa  102  2e-21  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2212  cold shock-like protein CspD  68.18 
 
 
73 aa  101  4e-21  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0732526  n/a   
 
 
-
 
NC_007912  Sde_1685  cold-shock DNA-binding protein family protein  58.24 
 
 
89 aa  100  5e-21  Saccharophagus degradans 2-40  Bacteria  decreased coverage  0.0000000000048024  normal 
 
 
-
 
NC_007492  Pfl01_3592  cold-shock DNA-binding protein family protein  65.79 
 
 
93 aa  100  6e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01564  hypothetical protein  60.53 
 
 
79 aa  100  7e-21  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003958  cold shock protein CspD  59.21 
 
 
72 aa  100  9e-21  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3262  cold-shock DNA-binding domain-containing protein  68.66 
 
 
87 aa  100  9e-21  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.0000000103728 
 
 
-
 
NC_004347  SO_2628  stress response protein CspD  68.18 
 
 
68 aa  99.4  2e-20  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_1751  cold-shock DNA-binding protein family protein  68.18 
 
 
68 aa  99.4  2e-20  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00123105  normal 
 
 
-
 
NC_011149  SeAg_B0945  cold shock domain protein CspD  66.67 
 
 
73 aa  99  2e-20  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00738434  n/a   
 
 
-
 
NC_009438  Sputcn32_2229  cold-shock DNA-binding domain-containing protein  68.18 
 
 
68 aa  99.4  2e-20  Shewanella putrefaciens CN-32  Bacteria  normal  0.205522  n/a   
 
 
-
 
NC_011080  SNSL254_A0978  cold shock domain protein CspD  66.67 
 
 
73 aa  99  2e-20  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.401823  normal 
 
 
-
 
NC_011083  SeHA_C1042  cold shock domain-containing protein CspD  66.67 
 
 
73 aa  99  2e-20  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2058  cold-shock DNA-binding domain-containing protein  68.18 
 
 
68 aa  99  2e-20  Shewanella amazonensis SB2B  Bacteria  normal  0.0186622  normal  0.543357 
 
 
-
 
NC_009901  Spea_2534  cold-shock DNA-binding domain-containing protein  66.67 
 
 
68 aa  98.6  2e-20  Shewanella pealeana ATCC 700345  Bacteria  normal  0.629108  n/a   
 
 
-
 
NC_011205  SeD_A1011  cold shock domain-containing protein CspD  66.67 
 
 
73 aa  99  2e-20  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.725964  normal 
 
 
-
 
NC_008321  Shewmr4_1646  cold-shock DNA-binding protein family protein  68.18 
 
 
68 aa  99.4  2e-20  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00000452654  normal 
 
 
-
 
NC_008322  Shewmr7_1721  cold-shock DNA-binding protein family protein  68.18 
 
 
68 aa  99.4  2e-20  Shewanella sp. MR-7  Bacteria  hitchhiker  0.00000154262  normal 
 
 
-
 
NC_011094  SeSA_A1061  cold shock domain protein CspD  66.67 
 
 
73 aa  99  2e-20  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.510663  normal  0.839324 
 
 
-
 
NC_009092  Shew_1564  cold-shock DNA-binding domain-containing protein  65.15 
 
 
68 aa  98.2  3e-20  Shewanella loihica PV-4  Bacteria  normal  0.0747165  normal  0.986392 
 
 
-
 
CP001509  ECD_00885  cold shock protein-like protein  68.18 
 
 
74 aa  97.1  7e-20  Escherichia coli BL21(DE3)  Bacteria  normal  0.679557  n/a   
 
 
-
 
CP001637  EcDH1_2762  cold-shock DNA-binding domain protein  68.18 
 
 
74 aa  97.1  7e-20  Escherichia coli DH1  Bacteria  hitchhiker  0.00553863  n/a   
 
 
-
 
NC_009801  EcE24377A_0953  stationary phase/starvation inducible regulatory protein CspD  68.18 
 
 
74 aa  97.1  7e-20  Escherichia coli E24377A  Bacteria  hitchhiker  0.00980817  n/a   
 
 
-
 
NC_010468  EcolC_2716  stationary phase/starvation inducible regulatory protein CspD  68.18 
 
 
74 aa  97.1  7e-20  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_00891  hypothetical protein  68.18 
 
 
74 aa  97.1  7e-20  Escherichia coli BL21  Bacteria  normal  0.67802  n/a   
 
 
-
 
NC_011353  ECH74115_1041  stationary phase/starvation inducible regulatory protein CspD  68.18 
 
 
74 aa  97.1  7e-20  Escherichia coli O157:H7 str. EC4115  Bacteria  decreased coverage  0.000029024  normal 
 
 
-
 
NC_009800  EcHS_A0984  stationary phase/starvation inducible regulatory protein CspD  68.18 
 
 
74 aa  97.1  7e-20  Escherichia coli HS  Bacteria  normal  0.102908  n/a   
 
 
-
 
NC_010658  SbBS512_E2449  stationary phase/starvation inducible regulatory protein CspD  68.18 
 
 
74 aa  97.1  7e-20  Shigella boydii CDC 3083-94  Bacteria  normal  0.0782347  n/a   
 
 
-
 
NC_010498  EcSMS35_2280  stationary phase/starvation inducible regulatory protein CspD  68.18 
 
 
74 aa  97.1  7e-20  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.00002354  normal  0.0221589 
 
 
-
 
NC_009052  Sbal_2474  cold-shock DNA-binding domain-containing protein  66.67 
 
 
68 aa  97.1  8e-20  Shewanella baltica OS155  Bacteria  hitchhiker  0.00220065  n/a   
 
 
-
 
NC_009997  Sbal195_2587  cold-shock DNA-binding domain-containing protein  66.67 
 
 
68 aa  97.1  8e-20  Shewanella baltica OS195  Bacteria  normal  0.138  normal  0.042071 
 
 
-
 
NC_009665  Shew185_2467  cold-shock DNA-binding domain-containing protein  66.67 
 
 
68 aa  97.1  8e-20  Shewanella baltica OS185  Bacteria  hitchhiker  0.0000143105  n/a   
 
 
-
 
NC_011663  Sbal223_1877  cold-shock DNA-binding domain protein  66.67 
 
 
68 aa  97.1  8e-20  Shewanella baltica OS223  Bacteria  hitchhiker  0.00131631  hitchhiker  0.0000956681 
 
 
-
 
NC_008345  Sfri_2256  cold-shock DNA-binding domain-containing protein  65.15 
 
 
68 aa  97.1  8e-20  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3167  cold-shock DNA-binding domain protein  67.69 
 
 
68 aa  96.7  9e-20  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000000493488  hitchhiker  0.00220171 
 
 
-
 
NC_007951  Bxe_A0798  cold-shock DNA-binding protein family protein  67.69 
 
 
68 aa  96.7  9e-20  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.0000000000000106482  normal 
 
 
-
 
NC_009832  Spro_1672  cold-shock DNA-binding domain-containing protein  61.33 
 
 
73 aa  96.3  1e-19  Serratia proteamaculans 568  Bacteria  normal  normal  0.974123 
 
 
-
 
NC_013421  Pecwa_1976  cold-shock DNA-binding domain protein  66.67 
 
 
73 aa  95.9  1e-19  Pectobacterium wasabiae WPP163  Bacteria  normal  0.995657  n/a   
 
 
-
 
NC_012917  PC1_1710  cold-shock DNA-binding domain protein  66.67 
 
 
73 aa  96.3  1e-19  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.138064  n/a   
 
 
-
 
NC_009708  YpsIP31758_2609  cold shock domain-containing protein CspD  66.67 
 
 
87 aa  95.5  2e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2694  cold-shock DNA-binding domain-containing protein  66.67 
 
 
87 aa  95.5  2e-19  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.251619  n/a   
 
 
-
 
NC_010622  Bphy_0567  cold-shock DNA-binding domain-containing protein  64.18 
 
 
68 aa  95.9  2e-19  Burkholderia phymatum STM815  Bacteria  unclonable  0.0000000000101913  hitchhiker  0.000143899 
 
 
-
 
NC_010159  YpAngola_A1599  cold shock domain-containing protein CspD  66.67 
 
 
87 aa  95.5  2e-19  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2376  cold-shock DNA-binding domain-containing protein  67.19 
 
 
84 aa  95.9  2e-19  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.0000357457  n/a   
 
 
-
 
NC_007347  Reut_A2754  cold-shock DNA-binding protein family protein  63.77 
 
 
69 aa  95.1  3e-19  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1884  cold-shock DNA-binding domain-containing protein  63.64 
 
 
68 aa  94.7  3e-19  Shewanella sediminis HAW-EB3  Bacteria  normal  0.104557  hitchhiker  0.000000642748 
 
 
-
 
NC_010506  Swoo_2701  cold-shock DNA-binding domain-containing protein  63.64 
 
 
68 aa  94.7  3e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0238191  normal  0.0590257 
 
 
-
 
NC_012912  Dd1591_2369  cold-shock DNA-binding domain protein  66.67 
 
 
73 aa  94.4  5e-19  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1397  cold-shock DNA-binding protein family protein  65.22 
 
 
73 aa  94.4  5e-19  Enterobacter sp. 638  Bacteria  normal  normal  0.0666799 
 
 
-
 
NC_007973  Rmet_2894  cold-shock DNA-binding protein family protein  66.15 
 
 
69 aa  94  6e-19  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.620309 
 
 
-
 
NC_007614  Nmul_A2246  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  93.6  8e-19  Nitrosospira multiformis ATCC 25196  Bacteria  decreased coverage  0.000000157436  n/a   
 
 
-
 
NC_007954  Sden_1832  CspD, cold shock  65.62 
 
 
67 aa  93.6  9e-19  Shewanella denitrificans OS217  Bacteria  normal  0.0689958  n/a   
 
 
-
 
NC_003910  CPS_2895  cold shock-like protein CspD  61.11 
 
 
72 aa  93.2  1e-18  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.00549014  n/a   
 
 
-
 
NC_012880  Dd703_2269  cold-shock DNA-binding domain protein  66.67 
 
 
73 aa  92.8  1e-18  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp1053  cold shock-like transcription regulator protein  62.69 
 
 
67 aa  92  2e-18  Ralstonia solanacearum GMI1000  Bacteria  normal  0.470883  normal 
 
 
-
 
NC_007404  Tbd_0855  cold-shock DNA-binding protein family protein  62.12 
 
 
68 aa  92  2e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.563444  normal  0.445485 
 
 
-
 
NC_009076  BURPS1106A_0962  cold shock protein  62.69 
 
 
67 aa  91.7  3e-18  Burkholderia pseudomallei 1106a  Bacteria  decreased coverage  0.000153995  n/a   
 
 
-
 
NC_009074  BURPS668_0958  cold shock protein  62.69 
 
 
67 aa  91.7  3e-18  Burkholderia pseudomallei 668  Bacteria  unclonable  0.000000000000117939  n/a   
 
 
-
 
NC_006348  BMA2279  cold-shock domain-contain protein  62.69 
 
 
67 aa  91.7  3e-18  Burkholderia mallei ATCC 23344  Bacteria  decreased coverage  0.000000000750079  n/a   
 
 
-
 
NC_010551  BamMC406_2438  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  91.7  3e-18  Burkholderia ambifaria MC40-6  Bacteria  unclonable  0.00000000000180609  unclonable  0.0000000000176576 
 
 
-
 
NC_007434  BURPS1710b_1112  cold shock transcription regulator protein  64.62 
 
 
81 aa  92  3e-18  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.00000000170415  n/a   
 
 
-
 
NC_010084  Bmul_0775  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  91.7  3e-18  Burkholderia multivorans ATCC 17616  Bacteria  decreased coverage  0.0000000000150831  hitchhiker  0.000000000149768 
 
 
-
 
NC_008836  BMA10229_A1051  cold-shock domain-contain protein  62.69 
 
 
67 aa  91.7  3e-18  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000000000117316  n/a   
 
 
-
 
NC_007651  BTH_I0761  cold-shock domain-contain protein  64.62 
 
 
81 aa  92  3e-18  Burkholderia thailandensis E264  Bacteria  unclonable  0.00000000000025188  n/a   
 
 
-
 
NC_009675  Anae109_2494  cold-shock DNA-binding domain-containing protein  60.61 
 
 
67 aa  92  3e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.170049  decreased coverage  0.000196654 
 
 
-
 
NC_009080  BMA10247_2156  cold-shock domain-contain protein  62.69 
 
 
67 aa  91.7  3e-18  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.00000351487  n/a   
 
 
-
 
NC_008390  Bamb_2568  cold-shock DNA-binding domain-containing protein  62.69 
 
 
67 aa  91.7  3e-18  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000000063088  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0574  cold-shock domain-contain protein  62.69 
 
 
67 aa  91.7  3e-18  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.000000000000358394  n/a   
 
 
-
 
NC_007614  Nmul_A1291  cold-shock DNA-binding domain-containing protein  64.62 
 
 
67 aa  90.5  6e-18  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.515471  n/a   
 
 
-
 
NC_008825  Mpe_A2463  cold-shock DNA-binding protein family protein  58.67 
 
 
89 aa  90.5  7e-18  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.843644 
 
 
-
 
NC_007298  Daro_1388  cold-shock DNA-binding protein family protein  59.7 
 
 
67 aa  90.5  7e-18  Dechloromonas aromatica RCB  Bacteria  decreased coverage  0.0000000000000202704  normal  0.239262 
 
 
-
 
NC_003295  RSc2466  cold shock-like transcription regulator protein  61.19 
 
 
67 aa  90.1  8e-18  Ralstonia solanacearum GMI1000  Bacteria  normal  0.4868  normal 
 
 
-
 
NC_007510  Bcep18194_A5852  cold-shock DNA-binding protein family protein  61.19 
 
 
67 aa  90.1  8e-18  Burkholderia sp. 383  Bacteria  decreased coverage  0.0000000000587256  normal  0.480668 
 
 
 
NC_010508  Bcenmc03_2545  cold-shock DNA-binding domain-containing protein  61.19 
 
 
67 aa  90.1  8e-18  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.000000242015  decreased coverage  0.000000000715587 
 
 
-
 
NC_008542  Bcen2424_2520  cold-shock DNA-binding domain-containing protein  61.19 
 
 
67 aa  90.1  8e-18  Burkholderia cenocepacia HI2424  Bacteria  unclonable  0.000000000000151269  n/a   
 
 
-
 
NC_008060  Bcen_1909  cold-shock DNA-binding domain-containing protein  61.19 
 
 
67 aa  90.1  8e-18  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000000083542  n/a   
 
 
-
 
NC_007298  Daro_3093  cold-shock DNA-binding protein family protein  59.7 
 
 
72 aa  90.1  9e-18  Dechloromonas aromatica RCB  Bacteria  normal  0.475725  normal 
 
 
-
 
NC_009074  BURPS668_3598  CspE-related protein  60.61 
 
 
67 aa  90.1  1e-17  Burkholderia pseudomallei 668  Bacteria  normal  0.164204  n/a   
 
 
-
 
NC_008836  BMA10229_A1750  cold-shock domain-contain protein  60.61 
 
 
67 aa  90.1  1e-17  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2791  cold-shock domain-contain protein  60.61 
 
 
67 aa  90.1  1e-17  Burkholderia mallei ATCC 23344  Bacteria  normal  0.827238  n/a   
 
 
-
 
NC_009076  BURPS1106A_3622  cold-shock domain-contain protein  60.61 
 
 
67 aa  90.1  1e-17  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3609  cold shock transcription regulator protein  60.61 
 
 
67 aa  90.1  1e-17  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2936  cold-shock domain-contain protein  60.61 
 
 
67 aa  90.1  1e-17  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0430  cold-shock DNA-binding protein family protein  59.7 
 
 
67 aa  89.7  1e-17  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0000180464  normal 
 
 
-
 
NC_010681  Bphyt_3528  cold-shock DNA-binding domain protein  59.7 
 
 
67 aa  89.7  1e-17  Burkholderia phytofirmans PsJN  Bacteria  decreased coverage  0.00720053  normal  0.332876 
 
 
-
 
NC_009080  BMA10247_3184  cold-shock domain-contain protein  60.61 
 
 
67 aa  90.1  1e-17  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp0002  cold shock-like transcription regulator protein  62.12 
 
 
67 aa  88.6  2e-17  Ralstonia solanacearum GMI1000  Bacteria  unclonable  0.0000000106276  normal 
 
 
-
 
NC_010678  Rpic_3782  cold-shock DNA-binding domain protein  62.12 
 
 
67 aa  89  2e-17  Ralstonia pickettii 12J  Bacteria  normal  0.0399631  normal  0.208523 
 
 
-
 
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