| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_1116 |
|---|
| Symbol | |
|---|
| ID | 7410850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter lari RM2100 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012039 |
|---|
| Strand | + |
|---|
| Start bp | 1067004 |
|---|
| End bp | 1070234 |
|---|
| Gene Length | 3231 bp |
|---|
| Protein Length | 1076 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 643718242 |
|---|
| Product | cytochrome c biogenesis protein, CcmF/CycK/CcsA family |
|---|
| Protein accession | YP_002575689 |
|---|
| Protein GI | 222824115 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR03144] cytochrome c-type biogenesis protein CcsB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC AACTTTTAAC TTTTGGGGAT ATAAAAATTT CTATTTTTTT ATTTTTAATT
TTTGCCCTAT TTTGCGCCCT AGCTACTTTC ATAGAGAGCG CTTATAACAC TCCAACAGCA
TGGGCGATGA TCTATGGCTC TTCTTGGTTT GGCTTTATAC AACTCATACT AGGGATTAAT
CTTTTAGCTG CTCTTTTTAA ATACAAAATG TTTAATAAGA AAAAAATACC ACTTTTAATC
TTTCATATCT CATTTTTATT TATATTACTA GGCTCAGCGA TGACTAGATA TATGGGATTT
GAGGGAAATT TGCACATTAG AGAAAATGAA AAAAACAATA TCATTGAAAC TTCAAAAAGC
TATATTTACA TAGCAACCTT AAAAGATGAT AAAGTATATA GCGCTTCAAA ATCTGAATAT
ATCGCAACCT TGCCTTTTGT AAATGATTTT TCATTTGATT TAATCTTGCC TGATGAAAAA
GCTCAAATTG CATATGAAAA TTTAATCTTA GATGCAAAAG AAGTTTTTAT TGATGATAAC
AATTCTGCTC CACTTTTATC CTTAATGCTT TCACAAAATA ATGAATCCAA AGAATTGCTT
TTTCAAGCAG GAGATATTGA AAATATCAGT GGCATTAATA TAGCATTTTT AAATGACTCT
GTTCCAAGTC CTTATATAAA AATCGATAAA GAATTAAAGC TTAGTGCTGA TTTTGATTTA
AAATACATGT CAATGAGTGA TGGCAAAGAA AATATTTTAA AAGCAAACCA AAAAGCACAA
GCTAAAGATT TAAGATTGTA TTCTTTTAAT GATATTAATT TAGTGGTTAA ATTTGCTTCT
TTGCATGGTA AAAAAACCTT AGAAGGTATC AATCAAGCTC AAGATGAAAG TTTTTTTACT
TGGTTTAAAA ATAGTTGGAT AGAGCTAGGA CGCAATGCTT TGATTTCTTT ATTTGGCGAG
GCAAAATACT GGAATAATTC TTTATTAAAT AACTTCAAAG ATTTTGCTCA AAGCACTAAA
TATATGCCAA CTCAACTTTC AGATAATGCC ATTAATGCTT TAAAATTAAA ACTAAGCTAC
AAAGGAGAAT CCAAAGAAGT TTTCCTAGTA GAATACAACT CACCTATTCG CATTGATGTA
GCAGGTCAAC CTTTCTTTTT AAGATGGGGC CCTAAAGGAA TAGAAATGCC GTTTGAAATG
TACTTAAAAG ACTTTGAATT AGAACGCTAT CCTGGATCAA TGTCGCCTAT GTCTTATGCA
AGTTATGTAG AAATTGACAA TGCTAACAAG AAACTAGAGT ATAAAATTTT CATGAATAAT
GTTTTAGATT ATGAAGGTTA TAGATTTTAC CAAAGCTCAT ATGATCAAGA TGAACTTGGT
ACCATTCTTT CAGTTAATAA AGATCCAGGT AAAATTCCTA CATACATAGG ATATTTTTTA
CTCACACTGG GAATGTTTTT AAATGTTTTA AATCCTCATT CAAGATTTAG AACCTTAGCT
AAATTAATCA ATCAAGACAC CCTGAAAAAA ACAAGTGCTA TTTTAGCTTT TATATTAGTT
TTATTTACAG GCCAAAATAC TTACGCAAAT GAGCCTATCA AGGTAGATGA AGCACACGCT
AAAGAACTTG CTTCTTTGAT AGTACAAAAA CCTGATGGCA GAATGGTTCC TTTTAATACT
TTGGCCATGG AAGTTTTAGA AAAAATTCAC AAAACAACGA CCTTCCAAGG ACAAAGCGCT
GAAGCAACAA TCATATCAAT GATTTTTGAT GGTAGTGCAT GGTATGATAA AGATATTATT
TTTATGCCAA GCAGTCGTTT AGTTAATGAG GAAATTTCTA AAATTTTAGA AATTGAGCCT
AGAGCCTATA CTAGTTTTAA AGATTTTTTC ACTACAGATT CATATAAGCT ACAAAAATAT
GTAGAAAATG CCAATAGAAA AAATCCAAAC CGCAGAAGTG TTTTTGATAA AGAAATCATC
AAGCTTGATG AAAGAGTTAA TATTGTAAAT TTAATTTTCT CAGGTGATAT TTTTAGATTT
ATTCCTTTGC AAAATAGCAC AAATAATCAA TGGGTAGCAC CGCGTGAAGC CTATATAGGA
TTAAAAGGCG AAGAAGGTGT GGAAGTTAAA AGTATTTTAG AAAACTATTT TAATGCAGTT
AGTAATTCCA TTATACATAA TAACTGGGAT GAAGCAACTA AAAACTTAAA TGCTATCAAA
AATTACCAAG AAAAATACGG CCATGAGGTT ATGCCTAGTG CTAAAAAAAT TAACACTGAA
ATCTTTTTCA ATAAAAGTCA AATTTTCCTA AATCTTACCC CTCTTTATCT TTGTGCTGGA
TTTTTGCTTT TAATTATAGT TTTTATTAAG ATGCTGCTGC CAAAAATCCG CATTGACTTT
ATTTTTAAAT GTGTTTATGT ATTTAATATT GTGGCATTTT TCATCCATAC TTTAGGTTTG
GCTTTGCGTT GGTATATAGC AGGTCGCGCG CCATGGAGTA ATGCCTATGA AAGTATGGTT
TATATAGCTT GGGCTTTATC ATTATCTGGA ATTTTTTTCT CAAGAAAAAG TCCTATTGCG
CTTTCTTTAA CTTCTATTTT AGCAGGTGTT ACTTTAGGTG TGGCTCATCT TAGCCAAATG
GATCCACAAA TTACTAATTT AGTTCCTGTG TTACAATCAT ACTGGTTGAC CATACATGTT
TCAGTTATTA CTGCTAGTTA TGGATTTTTA GGTTTATGTG CTTTACTTGG AATTTTTGTA
TTAGTTTTAT TTTGCATGCT TAAAAACAAT GGCAAACATA ATGAAAATAT TTTAAGAAAT
ATCACAGAAG CCACAAGAAT CAACGAAATG GCGATGATCT TAGGACTTTG CTTACTTACA
GTTGGAAATT TCTTAGGTGC TATATGGGCA AATGAAAGCT GGGGAAGATA TTGGAGCTGG
GATTCTAAGG AAACTTGGGC TTTAATTAGT ATTTTAGTTT ATGCGGCTAT TTTACACATT
AGAATGGTGC CAAAATGGGC AAATCAATAC ACTTTTGCAC TTTGTTCCAT GTTTGCATAC
TGGGTGATTA TTATGACTTA TTTTGGAGTA AATTACTTTT TAACTGGTAT GCATTCTTAC
GCAGCAGGAG ATTCAGTAAA AATTCCTGAT TATGTATATT GGGGCTTTTT ATTTATGGTG
GCATTAAGCA TAGCAAGTTA TTTCAAAAAA TCTTATGCAA AAAAATTATA G
|
|---|
| Protein sequence | MKKQLLTFGD IKISIFLFLI FALFCALATF IESAYNTPTA WAMIYGSSWF GFIQLILGIN
LLAALFKYKM FNKKKIPLLI FHISFLFILL GSAMTRYMGF EGNLHIRENE KNNIIETSKS
YIYIATLKDD KVYSASKSEY IATLPFVNDF SFDLILPDEK AQIAYENLIL DAKEVFIDDN
NSAPLLSLML SQNNESKELL FQAGDIENIS GINIAFLNDS VPSPYIKIDK ELKLSADFDL
KYMSMSDGKE NILKANQKAQ AKDLRLYSFN DINLVVKFAS LHGKKTLEGI NQAQDESFFT
WFKNSWIELG RNALISLFGE AKYWNNSLLN NFKDFAQSTK YMPTQLSDNA INALKLKLSY
KGESKEVFLV EYNSPIRIDV AGQPFFLRWG PKGIEMPFEM YLKDFELERY PGSMSPMSYA
SYVEIDNANK KLEYKIFMNN VLDYEGYRFY QSSYDQDELG TILSVNKDPG KIPTYIGYFL
LTLGMFLNVL NPHSRFRTLA KLINQDTLKK TSAILAFILV LFTGQNTYAN EPIKVDEAHA
KELASLIVQK PDGRMVPFNT LAMEVLEKIH KTTTFQGQSA EATIISMIFD GSAWYDKDII
FMPSSRLVNE EISKILEIEP RAYTSFKDFF TTDSYKLQKY VENANRKNPN RRSVFDKEII
KLDERVNIVN LIFSGDIFRF IPLQNSTNNQ WVAPREAYIG LKGEEGVEVK SILENYFNAV
SNSIIHNNWD EATKNLNAIK NYQEKYGHEV MPSAKKINTE IFFNKSQIFL NLTPLYLCAG
FLLLIIVFIK MLLPKIRIDF IFKCVYVFNI VAFFIHTLGL ALRWYIAGRA PWSNAYESMV
YIAWALSLSG IFFSRKSPIA LSLTSILAGV TLGVAHLSQM DPQITNLVPV LQSYWLTIHV
SVITASYGFL GLCALLGIFV LVLFCMLKNN GKHNENILRN ITEATRINEM AMILGLCLLT
VGNFLGAIWA NESWGRYWSW DSKETWALIS ILVYAAILHI RMVPKWANQY TFALCSMFAY
WVIIMTYFGV NYFLTGMHSY AAGDSVKIPD YVYWGFLFMV ALSIASYFKK SYAKKL
|
|---|
| |