Gene Cla_0054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCla_0054 
SymboldapF 
ID7410615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCampylobacter lari RM2100 
KingdomBacteria 
Replicon accessionNC_012039 
Strand
Start bp54089 
End bp54838 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content31% 
IMG OID643717190 
Productdiaminopimelate epimerase 
Protein accessionYP_002574672 
Protein GI222823099 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0253] Diaminopimelate epimerase 
TIGRFAM ID[TIGR00652] diaminopimelate epimerase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value5.06343e-07 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTT ATAAGTACTG TGCTAGTGGG AATGATTTTG TAATATTTGC AGATAGTGAA 
AAAAAAGATC GTAGTGAATT AGCTAAAATT CTTTGTAATC GTTATGAAGG CATAGGTGCT
GATGGGCTTA TAGTGATAGT ACCTCATGAT AGATATGATT TTGAATGGGA ATTTTATAAT
TGTGATGGGA GTAAAGCAAA TATGTGTGGT AATGGATCGC GTGCAGCAGC GCACTTTGCT
CATCATCATT TAAAAAAATC TCAATATTTA AATTTCTTAA CCGGCGCAGG ACTTATAAAA
TCTTTTGTTG ATGATGATAT AGTTGAAATC AAACTTAGTG GAATAAAGGA TATTAAAGAA
GCTTTTGAGT ATAAAGATAG AATTTGGCAA GGATGTAATA CGGGAGTTCC GCACATAGTA
ACCTTTGTTG ATGATTTAAG TGAATTTGAT ATAAATTTAT GTAAGGAAGT GCGTAAAAAA
TACAATGCAA ATGTCAATTT TGCTAAAGTA GAAGATGATG AATTTATAAG AGTTAGAACT
TATGAGCGCG GGGTGGAAGA TGAGACTTTA GCTTGTGGTA CAGGTATGGG AGCTTGTTTT
TATCTTGCAT ATTTAAATCA AAAAGTAAAA GATGATATTT TGATAAAGCC AAAAAGTAAC
GAAAGTTTGT ATTTTAGATT AGAAGAGGAA CAAATATTTT TTAGAGGAAA GGTGAAGTGC
TGTTTTGAAG CTGATTATAA TTTTACTTAG
 
Protein sequence
MKFYKYCASG NDFVIFADSE KKDRSELAKI LCNRYEGIGA DGLIVIVPHD RYDFEWEFYN 
CDGSKANMCG NGSRAAAHFA HHHLKKSQYL NFLTGAGLIK SFVDDDIVEI KLSGIKDIKE
AFEYKDRIWQ GCNTGVPHIV TFVDDLSEFD INLCKEVRKK YNANVNFAKV EDDEFIRVRT
YERGVEDETL ACGTGMGACF YLAYLNQKVK DDILIKPKSN ESLYFRLEEE QIFFRGKVKC
CFEADYNFT