| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cla_0054 |
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| Symbol | dapF |
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| ID | 7410615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter lari RM2100 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012039 |
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| Strand | + |
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| Start bp | 54089 |
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| End bp | 54838 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 643717190 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002574672 |
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| Protein GI | 222823099 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.000000506343 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAATTTT ATAAGTACTG TGCTAGTGGG AATGATTTTG TAATATTTGC AGATAGTGAA
AAAAAAGATC GTAGTGAATT AGCTAAAATT CTTTGTAATC GTTATGAAGG CATAGGTGCT
GATGGGCTTA TAGTGATAGT ACCTCATGAT AGATATGATT TTGAATGGGA ATTTTATAAT
TGTGATGGGA GTAAAGCAAA TATGTGTGGT AATGGATCGC GTGCAGCAGC GCACTTTGCT
CATCATCATT TAAAAAAATC TCAATATTTA AATTTCTTAA CCGGCGCAGG ACTTATAAAA
TCTTTTGTTG ATGATGATAT AGTTGAAATC AAACTTAGTG GAATAAAGGA TATTAAAGAA
GCTTTTGAGT ATAAAGATAG AATTTGGCAA GGATGTAATA CGGGAGTTCC GCACATAGTA
ACCTTTGTTG ATGATTTAAG TGAATTTGAT ATAAATTTAT GTAAGGAAGT GCGTAAAAAA
TACAATGCAA ATGTCAATTT TGCTAAAGTA GAAGATGATG AATTTATAAG AGTTAGAACT
TATGAGCGCG GGGTGGAAGA TGAGACTTTA GCTTGTGGTA CAGGTATGGG AGCTTGTTTT
TATCTTGCAT ATTTAAATCA AAAAGTAAAA GATGATATTT TGATAAAGCC AAAAAGTAAC
GAAAGTTTGT ATTTTAGATT AGAAGAGGAA CAAATATTTT TTAGAGGAAA GGTGAAGTGC
TGTTTTGAAG CTGATTATAA TTTTACTTAG
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| Protein sequence | MKFYKYCASG NDFVIFADSE KKDRSELAKI LCNRYEGIGA DGLIVIVPHD RYDFEWEFYN
CDGSKANMCG NGSRAAAHFA HHHLKKSQYL NFLTGAGLIK SFVDDDIVEI KLSGIKDIKE
AFEYKDRIWQ GCNTGVPHIV TFVDDLSEFD INLCKEVRKK YNANVNFAKV EDDEFIRVRT
YERGVEDETL ACGTGMGACF YLAYLNQKVK DDILIKPKSN ESLYFRLEEE QIFFRGKVKC
CFEADYNFT
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