Gene Hlac_3327 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHlac_3327 
Symbol 
ID7402183 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalorubrum lacusprofundi ATCC 49239 
KingdomArchaea 
Replicon accessionNC_012030 
Strand- 
Start bp76517 
End bp77512 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content53% 
IMG OID643709879 
ProductCRISPR-associated protein Cas1 
Protein accessionYP_002567445 
Protein GI222481209 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGAAAC CCAATCATCA CGTATTCACC GACGGCGAAC TGTCGCGAAG TGAAGACACA 
CTCAGAATCG ACACCCTCGA TGGGGAGGTG GAACACCTAC CGGTCGAAAG TATCGACACG 
CTGTATCTGC ACGGGCAGAT CGATTTCAAT ACCCGAGCAC TCGGCCTGCT CAACGATCAC 
GGAGTTCCTG CGCACGTGTT CGGATGGAAG GACTATTACA AAGGGTCATA TCTCCCGAAA 
CGGAGCCATC TCTCGGGAAA CACCGTCGTC GAGCAGGTAC GCGCGTATGA TGATCCGGAT 
CGTCGACTCG GGATTGCCAC GTTGATGATC GAAGCGAGTA TCCATAATAT GCGGGCAAAT 
CTTGTCTATT ATAATGCCCG CGACTGTTCG TTCGACTCAG AAATCGATCG GCTCGAATCA 
CTCAAGACGA AAGCAAGCAC AGCCGAAAGC ATTGACGGAC TTCGTGGGAC CGAAGCAACC 
GCACGCAAAA CCTATTATTC GTGTTTCAGT GAGATTCTGC GTGACCCGTT CGCCCTAGAT 
CGGCGTGAAT ACAATCCACC GACCAACGAG ACGAACGCGC TCATTTCGTT CCTGAACGCG 
ATGGTTTATA CGGCCTGTGT CTCTGCGATC CGCAAGACAG CACTTGATCC AACAGTCGGG 
TTCATGCATG AACCGGGTGA TCGCCGATTT ACGCTCTCGC TCGATATCGC GGATATTTAT 
AAACCGATAC TCGCGGATCG TGTGCTGTTT CGGCTCGTAA ACCGTCGACA GATCAGCCCT 
GATGAGTTCG AATCGGATCT CGATGGCTGT CTGCTTACTG AAGACGGTCG ACTGACAGTG 
CTTGCCGAGT ATGAGGAAAC GCTTGATAAA ACAGTCGAGC ATCCCCGACT AAAGCGAAAC 
GTGAGCTACA AAACACTCGT GCAAACGGAT GTGTACAGTT TGAAGAAGCA CATACTGACC 
GGCGAGCCGT ACCGGCCGAC CGAACGGTGG TGGTAA
 
Protein sequence
MTKPNHHVFT DGELSRSEDT LRIDTLDGEV EHLPVESIDT LYLHGQIDFN TRALGLLNDH 
GVPAHVFGWK DYYKGSYLPK RSHLSGNTVV EQVRAYDDPD RRLGIATLMI EASIHNMRAN 
LVYYNARDCS FDSEIDRLES LKTKASTAES IDGLRGTEAT ARKTYYSCFS EILRDPFALD 
RREYNPPTNE TNALISFLNA MVYTACVSAI RKTALDPTVG FMHEPGDRRF TLSLDIADIY 
KPILADRVLF RLVNRRQISP DEFESDLDGC LLTEDGRLTV LAEYEETLDK TVEHPRLKRN 
VSYKTLVQTD VYSLKKHILT GEPYRPTERW W