| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4387 |
|---|
| Symbol | gidB |
|---|
| ID | 7387960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3719136 |
|---|
| End bp | 3719771 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643653030 |
|---|
| Product | 16S rRNA methyltransferase GidB |
|---|
| Protein accession | YP_002551201 |
|---|
| Protein GI | 222150244 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
|---|
| TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCGA GTCTCTTTCA GCGGCTTACC GGTCTACGTG TTTCACGTGA AACATACGAA
AAACTGGATC ATTTCGTCGA TCTGTTTGGC AAGTGGTCCA AGGTCATCAA CCTTGTTGCC
AATTCAACGA AAGATCAGAT CTGGCATCGA CATGTCATTG ATAGCGCGCA GCTGTTTAAG
CTTCGTCCGA ACCCACAGCA CTGGATCGAC TTGGGAAGTG GTGGCGGATT TCCGGGCGTC
ATTACTGCGA TTTTATTGTC GGAAAAGAGC GACGGCTGGG TTGATTTGGT CGAGAGCAAT
AACAAAAAAG CAGCTTTCCT CCGCACGGCT CTGATGGAAA CCGGCGCCCG AGGCAGGGTT
CATCCCGTGC GAATCGAAGA GGCACATAAA AGTCTGTCGG ATTGCGATAC AATTTCGGCA
CGAGCGCTTG CGGATCTCGA TCTGCTTTTC TCTTATGCCT CTCCTTGGGC CGAAAAAAAC
AAAAATCTTA ATTTTCTCCT GCATAAAGGT CGGGATTACC AGTCTGAAGT TAACAATGCG
CGTGACCGAT GGACGTTTGA TCTGATAATA CATCCTAGCG TGCTTGAAGC CGACTCTGTC
ATCCTGGAAG TGAGCGGGCT TGCACGATCA AAGTAA
|
|---|
| Protein sequence | MSASLFQRLT GLRVSRETYE KLDHFVDLFG KWSKVINLVA NSTKDQIWHR HVIDSAQLFK
LRPNPQHWID LGSGGGFPGV ITAILLSEKS DGWVDLVESN NKKAAFLRTA LMETGARGRV
HPVRIEEAHK SLSDCDTISA RALADLDLLF SYASPWAEKN KNLNFLLHKG RDYQSEVNNA
RDRWTFDLII HPSVLEADSV ILEVSGLARS K
|
|---|
| |