| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3954 |
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| Symbol | hemK |
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| ID | 7387302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3330031 |
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| End bp | 3330912 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643652692 |
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| Product | protoporphyrinogen oxidase |
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| Protein accession | YP_002550867 |
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| Protein GI | 222149910 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2890] Methylase of polypeptide chain release factors |
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| TIGRFAM ID | [TIGR00536] HemK family putative methylases
[TIGR03534] protein-(glutamine-N5) methyltransferase, release factor-specific |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAGGCG CACCGGTGAC GCTGAAGCAG GCGATCACTG CCGCTCGTCT TCGGTTTGCG
CAAGCGGGTA TCGCCGATGC GCCACGCGAT GCGCGGACCT TGATCGCCGG TCTTCTTGGA
CTGACGTCGA CCGATCTTAT CGTGCAGGAC AACCGGGTTT TGAGCGCCGA GGAGACGAGC
CTGATCGAGA CGGCAGTCGA GCGACGTCTG TTGTTTGAGC CTGTCCATCG GATTTTGGGA
CGGCGGGCCT TTTACGGTCT GGAACTGGCC CTGTCGCCAG CGACATTGGA ACCGCGACCC
GATACGGAAA TCCTGATTGA GCGTGTTTTG CCGCATCTTC ATGCCATGGT GGCGAAGAAT
GGCAGCGTGC GCCTGCTGGA TATGGGGACG GGCACCGGGG CAATTGCCCT GGCGCTTTTG
CAGGAATGTC CGGGTACTAC AGCATTGGCG ACCGATATTT CCGCCGAAGC GTTGGCCATG
GCGCGGCAGA ACGCCGCAGC CAACTCACTT TCCGACCGGT TCGAGACGCT GCAAAGCCAT
TGGTACGAGG CGTTATCGGG CCGTTTTGAC ATCATTCTGT CGAATCCGCC CTATATTGTC
AGCGATGTGA TTAAAGATCT GGCCCCTGAC GTTCGGCTTT ATGATCCTGC CGTAGCACTT
GACGGTGGCG ACGATGGGCT GGATGCTTAC CGTGCAATTG CCGCTGGCGC CGCCGATTTT
CTGAAACCGG GCGGTCTGGT TGGGGTGGAA ATCGGTTACG ATCAGGCGAT GGCGGTGACG
CAACTTTTCG CAAACAATAG CTTCGTTCTT GTGGAAAGCG CAAAGGATCA CGGTGATAAT
GATCGGATTC TGTTGTTTGC TCAGACCGGA CCGCAACTAT AG
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| Protein sequence | MTGAPVTLKQ AITAARLRFA QAGIADAPRD ARTLIAGLLG LTSTDLIVQD NRVLSAEETS
LIETAVERRL LFEPVHRILG RRAFYGLELA LSPATLEPRP DTEILIERVL PHLHAMVAKN
GSVRLLDMGT GTGAIALALL QECPGTTALA TDISAEALAM ARQNAAANSL SDRFETLQSH
WYEALSGRFD IILSNPPYIV SDVIKDLAPD VRLYDPAVAL DGGDDGLDAY RAIAAGAADF
LKPGGLVGVE IGYDQAMAVT QLFANNSFVL VESAKDHGDN DRILLFAQTG PQL
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