| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3832 |
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| Symbol | xylA |
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| ID | 7388523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3183055 |
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| End bp | 3184362 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643652590 |
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| Product | xylose isomerase |
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| Protein accession | YP_002550771 |
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| Protein GI | 222149814 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2115] Xylose isomerase |
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| TIGRFAM ID | [TIGR02630] xylose isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.100149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACAG GCTTTTTCGG CGACATCACC AAGATCAAAT ATGAAGGCCC TGACAGCACC
AATCCGCTGG CCTTCCGCCA CTATAACCCC GATGAAGTGG TGATGGGCAA GCGGATGGAG
GACCATCTGC GTTTTGCCGT GGCCTACTGG CACACCTTCG TGTGGCCGGG CACCGACCCG
TTCGGCGGCA ATACGTTTGA GCGTCCTTGG TTCAAGGATT CGATGGAGGC TGCCAAGCTG
AAGGCCGATG TGGCCTTTGA ATTCTTCCAG TTACTCGGCA CGCCTTACTA TTGCTTCCAT
GATGCGGATG CGCGTCCTGA AGGCGCGTCC TTTGCGGAAA ATACCAAAAA TCTCAATGAG
ATTGTCGATT ACTTTGCCCA AAAGCAGGCC GATACCGGCG TCAAGCTGTT GTGGGGTACG
GCCAACATGT TCTCGCATCG TCGCTATATG TCGGGTGCCG CCACCAACCC GGACCCTGAC
GTCTTTGCCT TTGCCGCCGC AACCGTCAAG ACTTGCCTGG ATGCCACCCA GAAGCTGGGC
GGCGAAAACT ACGTGCTGTG GGGTGGCCGT GAAGGCTATG AAACCCTGCT CAACACTGAC
CTGAAACAGG AACTGGACCA TATGGGCCGT TTCCTCAACA TGGTGGTGGA ATACAAGCAC
AAGATCGGCT TCAAGGGCGC AATCCTGATC GAGCCGAAGC CGCAGGAGCC TTCCAAGCAT
CAGTATGATT ATGATGTGGC CACCGTCTAC GGCTTCCTCA AGACTTATGG TCTGGAGAAG
GAAGTGAAGG TCAATATCGA GCAGGGCCAT GCCATTCTGG CCGGTCATAC GTTTGAGCAT
GAACTGGCGC TGGCCAACGC GCTGGGCATT TTCGGTTCCA TCGACATGAA CCGCAATGAC
TATCAATCCG GCTGGGATAC TGACCAGTTC CCCAACAACG TGCCGGAAAT GGCGCTGGCC
TATTATCAGG TCCTGCAGGC GGGTGGCTTT ACCTCCGGCG GCACCAATTT CGATAGCAAG
CTGCGCCGCC AGTCCATCGA CCCGGCGGAT CTGCTGATCG GCCATATCGG CGGCATGGAT
TGCTGCGCCC GTGGCCTGAA GGCGGCTGCG AAAATGGTGG AAGACAAGGC TCTGTCCGGC
CCGCTTGCCA ACCGTTATGC AGGCTGGAAT AGCGACGGCG CCAAGGCCAT GCTGGCCAGC
GGCACGCTGG AAAGCATTGC GGCCCGCGTT GAAGGCGAAA ACATCAATCC GCAGCCGGTC
TCCGGTCAGC AGGAATTGTT GGAAAACGTC GTCAATCGCT ACGTCTGA
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| Protein sequence | MSTGFFGDIT KIKYEGPDST NPLAFRHYNP DEVVMGKRME DHLRFAVAYW HTFVWPGTDP
FGGNTFERPW FKDSMEAAKL KADVAFEFFQ LLGTPYYCFH DADARPEGAS FAENTKNLNE
IVDYFAQKQA DTGVKLLWGT ANMFSHRRYM SGAATNPDPD VFAFAAATVK TCLDATQKLG
GENYVLWGGR EGYETLLNTD LKQELDHMGR FLNMVVEYKH KIGFKGAILI EPKPQEPSKH
QYDYDVATVY GFLKTYGLEK EVKVNIEQGH AILAGHTFEH ELALANALGI FGSIDMNRND
YQSGWDTDQF PNNVPEMALA YYQVLQAGGF TSGGTNFDSK LRRQSIDPAD LLIGHIGGMD
CCARGLKAAA KMVEDKALSG PLANRYAGWN SDGAKAMLAS GTLESIAARV EGENINPQPV
SGQQELLENV VNRYV
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