Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3188 |
Symbol | |
ID | 7388126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2642170 |
End bp | 2642856 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643652110 |
Product | ABC transporter substrate binding protein (amino acid) |
Protein accession | YP_002550294 |
Protein GI | 222149337 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.484393 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCGCCG CAGCCATGGC GCAAAACAGC ATTGTCTTTA CCACGGAAGA TTACCCACCT TACAATTTCA GGGAAAACGG GGTGGACAAG GGCGTCGGCT ACGAACAGGT CGAAATGATC ATGAAGGGTC TGTCGATCCC TTATACCATC GAGATGATGC CCTGGGCCCG CGCCATCGCG ATGGCCGAAA CCGAACCGAT GACCTGCGTG TTTACCGCAG CCCATATCCC TGAGCGCGAA GGCCGCTTCA AATGGGTCGA GCCGCTGGCC ATCGATCGCA ATATCATCAT GAGCCGCAAG GGCTCCGGCA TTCAGGTGCA CAATGTCGAA GAAGCCCGCA AATATATTGT CGGCACCCAG CGCGACGACT ACACTCAGGC TCTTCTGGAA CGGCATGATT TTCCCAGGAT CGACCTCGCC GCCAACCTCG ATCTGACCAT CAAGAAGCTG GAAAGCGGCC GGATCGACCT CATGCCGGTC TCGGAAAAAT TCTATCACAA GCTGGTGGAC GAAGGGCATC CGCTGGAACA GCAATTCGTG CTGACCGAGC AGAAATTCGC CATTGCCTGC AATAAATCCA TGCCCGATGC CCTGATAGCG CGCATGCAGG ACGGGCTCGA TCGTCTGATT GCCGACGGCA CGCAAGCCAG GCTTTCGCGA GAATATGGCC TGTTGCAGCC TCAATAG
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Protein sequence | MAAAAMAQNS IVFTTEDYPP YNFRENGVDK GVGYEQVEMI MKGLSIPYTI EMMPWARAIA MAETEPMTCV FTAAHIPERE GRFKWVEPLA IDRNIIMSRK GSGIQVHNVE EARKYIVGTQ RDDYTQALLE RHDFPRIDLA ANLDLTIKKL ESGRIDLMPV SEKFYHKLVD EGHPLEQQFV LTEQKFAIAC NKSMPDALIA RMQDGLDRLI ADGTQARLSR EYGLLQPQ
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