Gene Avi_1840 details

Gene Information

• Locus tag: Avi_1840
• Symbol: rplC
• ID: 7386802
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1532851
• End bp: 1533492
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651126
• Product: 50S ribosomal protein L3
• Protein accession: YP_002549323
• Protein GI: 222148366
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.053801
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTTCAG GTGTGATTGC ACAGAAAGTG GGAATGACCC GGGTCTATAA TGACGCCGGC 
GAGCATGTCC CGGTAACAGT ACTACGCTTG GATAACTGCC AGGTCCTGGC TCAGCGGACT 
GTCGATAAAC ACGGCTACAC TGCCGTTCAG CTCGGCGCCG GTCAGGCCAA GGTCAAGAAT 
ACATCCAAGG CAATGCGCGG CAATTTTGCC GCTGCAAACG TCGAGCCCAA GGCTAAGCTC 
GTCGAATTTC GCGTTTCCGA AGACAACCTC ATGGATGTCG GCTCCGAGCT GAAGGCTGGT 
CATTTTGAAG CCGGTCAGTT GGTTGACGTG ACCGGCACCA CGATCGGTAA GGGTTTTGCC 
GGTGCCATGA AGCGCCACAA TTTCGGTGGT CTTCGTGCAA CCCACGGCGT GTCCGTCTCG 
CACCGTTCAC ACGGCTCGAC CGGTTCCAAC CAGGATCCGG GTAAGGTCTG GAAGGGCAAG 
CGTATGGCCG GTCACATGGG TCAGACCCGC GTCACCACCC AGAATCTGGA AGTCGTTTCG 
ACCGATGAAG ATCGTGGCCT TATCCTGGTG AAGGGCGCTG TGCCCGGTTC CAAGGGTTCC 
TGGATCATCG TGCGCGACGC CGTCAAGTCG GCAGCGAAGT AA 

 

Protein sequence

MRSGVIAQKV GMTRVYNDAG EHVPVTVLRL DNCQVLAQRT VDKHGYTAVQ LGAGQAKVKN 
TSKAMRGNFA AANVEPKAKL VEFRVSEDNL MDVGSELKAG HFEAGQLVDV TGTTIGKGFA 
GAMKRHNFGG LRATHGVSVS HRSHGSTGSN QDPGKVWKGK RMAGHMGQTR VTTQNLEVVS 
TDEDRGLILV KGAVPGSKGS WIIVRDAVKS AAK