Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1298 |
Symbol | |
ID | 7387664 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1088907 |
End bp | 1089614 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643650725 |
Product | transcriptional regulator TetR family |
Protein accession | YP_002548931 |
Protein GI | 222147974 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCATGA GCGACGAACA ACCCGCCAAG ATAAAGCCGA CCCGCGTCGG TAGGCCCCGG TTGGGAGCGG AGGTTGGCCG CGAGGCAATT CTCTCCAAAG CCATTCATGC TTTTGGCCGC CAGGGCTTTG ACGGGGTCAA TCTGCGGGAA CTGGCAAGGC AGGTCGGAGT CAATATTGCG CTGGCAAATT ATCACTTCGG CTCAAAAGCC GCCCTATGGG AGGCATGCCT CGAACGCATG AACCTGCGCG CGGCGCCCTG CATCAACGCT TTGCAGGCCA TTTCGGCGGC CCCTTTGGCT TATTCTCAGA GAATGGCGGA TTTCTATGCC GCCTTCATCC GCTTCAATGC CGACCTGCCG GATTATGGCC TGTTCATTCT CCAGGAGATG GTTCAGGAAG GCCCGCGCCA GGAACAGGTG AAAGCCTCGC TGATCGATCC TTTTCACGAT GTGACGGTGC CGCTGCTCTT GGAAGGAATG GACCTGGGAC TGGTCCACCG GCAGGATGCA TCCCTGCTGT TTTTCACCCA TTCCATCACC ATTTCGCACG TTCTGGCAGG CCAAGGCGCC ATGGCGTTTT TTCTAGAGGA AGAAGATCGT CGGGAGCAAA CATTGAAGGA TATTCTGGCA ATGATCATCC GCTCCGCAGT CGGCGTGCTG ACGGAGGAAT TTGAGCAGGC GATGGCATTG GCCACCAAAG TCGCATAA
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Protein sequence | MTMSDEQPAK IKPTRVGRPR LGAEVGREAI LSKAIHAFGR QGFDGVNLRE LARQVGVNIA LANYHFGSKA ALWEACLERM NLRAAPCINA LQAISAAPLA YSQRMADFYA AFIRFNADLP DYGLFILQEM VQEGPRQEQV KASLIDPFHD VTVPLLLEGM DLGLVHRQDA SLLFFTHSIT ISHVLAGQGA MAFFLEEEDR REQTLKDILA MIIRSAVGVL TEEFEQAMAL ATKVA
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