| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0947 |
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| Symbol | sohB |
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| ID | 7387735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 795933 |
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| End bp | 796799 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643650463 |
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| Product | proteinase sohB |
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| Protein accession | YP_002548671 |
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| Protein GI | 222147714 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.328239 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGGTC TATGGAAGCG GTGGGTGCCG AAGCGGTTTC GCAAGCAGGA AATCGTCATT
CCAGTCGTGC GGCTGCATGG CGCGATCATG AGCGGCGGCA GCCGGTTTCG CCCGGCGCTG
AACCTCGCGG CTATCGCACC ACTTCTGGAA AAAGCCTTCA AGTTGAAGGA CAGTCCGGCT
GTGGTGCTGT CGCTCAATTC GCCAGGCGGC TCGCCGGTGC AATCGCGGAT GATCTTTCAG
CGCATCCGGA CACTGGCCGA TGAACACAGC AAGACCGTGC TGGTGTTCGT GGAGGATGTG
GCAGCCTCCG GCGGCTATAT GATCGCCCTT GCCGGCGATG AAATCATTGC CGACCCGACC
TCGATTGTCG GCTCGATCGG CGTCGTGTCC GGCGGTTTCG GCTTTCCTGA GTTGCTGAAG
AAGATCGGCG TCGAGCGGCG TGTCTATACA GCGGGCGAAA ACAAGGTGAT GCTCGATCCG
TTCCAGCCGG AAAAGCAGAG CGATATCGAG TATCTCAAGA CCCTTCAGCT GGATATTCAC
GATGTTTTCA TCGACATGGT CAAGACACGG CGCGGCATCC GGCTTAACGA CAATCCGGAG
CTGTTTTCCG GCTTGTTCTG GACGGGCCGC AAGGGTTTCG AACTTGGTCT GGTGGACGGA
CTGGGCAGTA TGCGTGAGGA GATCAAGGCG CGCTACGGCA AGACAGCCCG GCTGGAATTG
ATTTCGGGTG CCCGCGGCCT GTTCGGCAGG CGTCTGTCTG GGGTTGATAC GGCGTTTTCT
GCTCCCAGTG ATATCGGCAG CGCCGCCGCC GCCGGCCTTG TGGAGACGCT GGAAGATCGG
GCGCTCTGGG CGCGCTATGG GCTTTAG
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| Protein sequence | MAGLWKRWVP KRFRKQEIVI PVVRLHGAIM SGGSRFRPAL NLAAIAPLLE KAFKLKDSPA
VVLSLNSPGG SPVQSRMIFQ RIRTLADEHS KTVLVFVEDV AASGGYMIAL AGDEIIADPT
SIVGSIGVVS GGFGFPELLK KIGVERRVYT AGENKVMLDP FQPEKQSDIE YLKTLQLDIH
DVFIDMVKTR RGIRLNDNPE LFSGLFWTGR KGFELGLVDG LGSMREEIKA RYGKTARLEL
ISGARGLFGR RLSGVDTAFS APSDIGSAAA AGLVETLEDR ALWARYGL
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