Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0162 |
Symbol | |
ID | 7388327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 149979 |
End bp | 152480 |
Gene Length | 2502 bp |
Protein Length | 833 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643649883 |
Product | Hemolysin-type calcium-binding protein |
Protein accession | YP_002548101 |
Protein GI | 222147144 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTATATA TTTTGGGTGG AAGTGGCAAC GATACAATCA CAGGCACGTC TGACTATGAC AACCTCAGCG GAGGCCTGGG CGATGACACC ATCAATGGCG GCGCAGGCAA CGATGTGCTC TCAGGGAATG GGGGAAATGA TGCAATTTCG GGAGAAGACG GCTCCGATTC CATTCGGGGA GGCTCAGGCA ACGACAGCCT CTCCGGCGGC GATGGAGTTG ATACTCTTTA TGGCGAAGCC GGTAATGACA GCCTTTCCGG CGATGCCGGT AACGATGTTC TGAATGGGGG AGCCGGGGCC GATATTCTTA ACGGCGGCGA TGGCACGGAT ACTGTCAACT ATACGTCAAG CGATGCGATC AATATAAACC TCGCAACGGG AGTGGCGAGT GGAGGCGATG CGCAAGGCGA TACCTTTGTC AGCATTGAGG TCATCAGTGC ATCGAGCCAA GACGATGTTC TTGTCGGCGA CGATAATGAC AATATCTTCA AGGGCGGCGA TGGCAGTGAT ACCATTCATG GTGGTGACGG CGATGACACG TTAGCGGGCG GCTTCGATGC GGATGTGATC AATGGCGGGA ACGGCTCCGA CACAGCAAGT TTTGTCGACA ACATGGCTGT GGTGGTCAAC CTCAAAACCG GCGAGATGAG CGGCGATGCC CAAGGTGATG TCCTGATCGA CATCGAAAAC CTCATGGGCT CCTACTATGA CGACACCCTT ACCGGTGACG ACGGCAATAA CGTTATCGAT GGATATTACG GTTGGGACCT TTTGGATGGC GGTTTGGGCG CCGACACCCT CAAGGGCGGG GCGGATGGTG GAGCGGCAGT CTACACCTAT TCGAACGAAG CCGTGCAGAT CAACATCGAC ACCGGTATTA ACACCGGCGG TTATGCAGAA GGCGATGTTT TCGAGAAAAT ACTTCAGGTC TATGGCTCTG ATTTCAATGA CACATTCACC GCCTCGAAAG ATGCCCGATT TGCAGGCGGC CTGGGTGATG ATCACTACAT TGTCAACAGC TCCTCCGTTT ATCTGATCGA ACAGGAGGGC GAGGGCATCG ACACCGTGAC GACCGGGTTA AACAGCTATT CTCTGACCAG GAATTTTGAA AACCTCACTT ACACCGGTAC GGCCAATTTC ACTGGATCTG GAACGGTGGC CGATAACGTG ATGATCAGCG GGGCCGGTGC GGATTACCTG TTTGGAAACA ACGGTAATGA TACGCTGATC GGTGGTGCCG GCGCAGACAA GTTAAGCGGT GGCGGTGGCA ATGATACCTC CAGCTATCGT GACTCGACGT CAGCGGTTAC TGTCAATCTG GCTACGGGTC TTGCGCAAGG TGGATTTGCA CAAGGAGATA CGTTTATCTC TATAGAAAGC CTGGAAGGCT CTGCATATAA TGATACGCTG ACCGGCAACA GAGAAAGCAA TACACTGCGC GGCGGCGATG GCGGCGATGT ATTGGACGGC GCGGCGGGCA GCGATACGGC GAGTTACCTG GATTCGACCA GTGCGGTCAC AGTTAACCTC CAAACCCGCA CGCTATCCGG TGGATATGCG AATGGAGATA CCATCATCTC TATCGAAAAT CTGGAAGGCT CAACCTATGC TGACAGCCTG ACGGGAGACG ATCAGGCCAA CGTTTTGACC GGTCGAACGG GAGCGGACAT CCTGGATGGC GGAGCCGGTT CCGATACGGC AAACTACAGC GACTCCACCG AAGGTGTAAT CATCAATCTC GTAACTGGTC AAACAGCCGG TGGCTCGGCA GAGGGCGACG TCCTCGTCTC GATAGAAAAC GTCACGGGTT CCGGCGAAGC CGATTACCTG ACGGGCAATG ATGGTAGCAA TGTGCTTTCA GGTGGAGAAG GCGATGACCA TCTGATCGGT GGCGGCGGCG ACGATCTGCT GAACGCAGGC AGCGGCGCGA ACATTCTGGA TGGCGGCGAC GGCAGCGATA CCGCAAGTTA CGCCGACTCT TCCGTTGGTA TCAGCGCAAG CCTCTCCGGA GACGCAGGCG TCGGCGGTTC GGCAGAAGGT GATGTGCTGA TCTCCATAGA AGCGTTGGAA GGTTCCTTTT ACGCCGACAC TCTTTCGGGA AGCGGATATG CGGACGTTCT TAAGGGTGGC GAGGACGCTG ATACGCTCTT TGGTCTTGAA GGTGACGATT CGCTTCATGG CGATGGCGGT GATGACGTCC TTTATGCGGA CGCTGGCGAT GACACGCTTG CCGGTGGTGA AGGCGACGAT GCCCTCTACG GCGGTGAAGG TAGCGATGTG TTCGTGTACA GCTCAAACTA TGGCAATGAT GTGATTTTCG ACTTTGACTC GTCGGCGGAC ACGATCGATC TGACCGACAT GGGCTTTGCC ACCGTCAGCG ATGCCGCCGC CTATGCAACC GAGATCGAGG ACGGCGTGCT GTTCACCTTC AGTAACGTGG ATACGCTGAC AGTGCATGGC TTGAACTATG CAAGCCTGAC ATACAGCGAT ACATTGATGT AA
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Protein sequence | MVYILGGSGN DTITGTSDYD NLSGGLGDDT INGGAGNDVL SGNGGNDAIS GEDGSDSIRG GSGNDSLSGG DGVDTLYGEA GNDSLSGDAG NDVLNGGAGA DILNGGDGTD TVNYTSSDAI NINLATGVAS GGDAQGDTFV SIEVISASSQ DDVLVGDDND NIFKGGDGSD TIHGGDGDDT LAGGFDADVI NGGNGSDTAS FVDNMAVVVN LKTGEMSGDA QGDVLIDIEN LMGSYYDDTL TGDDGNNVID GYYGWDLLDG GLGADTLKGG ADGGAAVYTY SNEAVQINID TGINTGGYAE GDVFEKILQV YGSDFNDTFT ASKDARFAGG LGDDHYIVNS SSVYLIEQEG EGIDTVTTGL NSYSLTRNFE NLTYTGTANF TGSGTVADNV MISGAGADYL FGNNGNDTLI GGAGADKLSG GGGNDTSSYR DSTSAVTVNL ATGLAQGGFA QGDTFISIES LEGSAYNDTL TGNRESNTLR GGDGGDVLDG AAGSDTASYL DSTSAVTVNL QTRTLSGGYA NGDTIISIEN LEGSTYADSL TGDDQANVLT GRTGADILDG GAGSDTANYS DSTEGVIINL VTGQTAGGSA EGDVLVSIEN VTGSGEADYL TGNDGSNVLS GGEGDDHLIG GGGDDLLNAG SGANILDGGD GSDTASYADS SVGISASLSG DAGVGGSAEG DVLISIEALE GSFYADTLSG SGYADVLKGG EDADTLFGLE GDDSLHGDGG DDVLYADAGD DTLAGGEGDD ALYGGEGSDV FVYSSNYGND VIFDFDSSAD TIDLTDMGFA TVSDAAAYAT EIEDGVLFTF SNVDTLTVHG LNYASLTYSD TLM
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