| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5539 |
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| Symbol | |
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| ID | 7381451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 536254 |
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| End bp | 538287 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649123 |
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| Product | signal transduction histidine kinase |
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| Protein accession | YP_002547360 |
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| Protein GI | 222106569 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2203] FOG: GAF domain
[COG3920] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCAAT CATTAAACGA CGACCAGGCC GAGCAGCGGG AGAGACGGCG CCTTGAGGCA
CTCAGGGCCT ATGACGTGCT TGACACGCCG CGCGAGAAGG ATTTTGACGA TATTGCCGCC
CTCGCCTCGC GGATCTGCGC GACGCCGATC GCCGTCGTCA ATCTGATCGA TGACAGCAGG
CAATTCTTCA AGGCGGAAGT CGGTCTTGGC GTGCGCGAGA CACCGTTCGA CAGTTCCTTC
TGCGCCAAGG CTATTCTGGA AGACGATTTC CTGATGATAC CGGATGCAAG TCAAGACAGC
CGGTTCAATC GCAATCCGCT GGTCACCGGC GAACCCCATC TGCGGTTTTA TGCCGGAGCC
GTCCTGAAAA CCGCTGATAA TTTACCCATC GGCACCGTCT GCGTGCTGGG TTTCGAACCC
AAGCAGCTGG ATGAGCTTCA ACAGGACACG TTGAAGGTTC TTGCCCGACA GGTGATGGTG
CAGCTGGAAT TACGCAAGGC GCTGAAGGAA AAAGCGCGTG AGGCGGAGGT ACAGCGCCGA
TTGAGCGAGC GCAGGCTGGC ACGCGTCACG GCCATGGAAC AACAGGACGA GCGCTCGCGA
AGCGCCCAGG CGGCCGGCCG GGTCGGCACG TTCGAATTGG ACATCGCTAC CAATACCATG
ACGGTTTCCA GCGAATTCTG TCGGGTCTTC GGCATTCCCG TGCAGACGTC CTATCCGGCT
TCGGCGATTG AGGATCTGGT GCATGAGGAC GATCGTGGCC TGCGCTCAAA CCCGGTCACA
CGGCGAGAGG GTTCGGCCAG CCCTGACGTG GATTATCGGA TCATCCGCGC CGACGATGAT
GAATTGCGCT GGATTTCGCG GCGGGCGCGC TTCGTTCACA ACGAAAAAGG CGAGATCACC
CGCATGGTCG GCGTGGTCTT CGACACCACC GATGCCAAGC TGAAAGAAGC GAAAAAGGCT
GCACTGTTAA AGCTGGGAGA CGAACTTCGC GCCGCCAGCA CTGTGGAAGA GATCACCCAA
AGCGCCGCCG CCATCCTGTC GGACGGTCTT GGCGTTGCCC GCGCAGGCTA TGCCGTGGTG
GATCGGACCG ACAATAGCTT TGCGGTCGCC TTCGACTGGG CATCCCATGG CACGGTCTCA
CTGGCGGGGC GCCATTCTCT CGAGAGATTT TCAGAAACGA TTGAGCACCT GCGCAAGGGA
GAGACATTGT CGATCCCCAA CGTCGCCTCA AGCAAATGGC CGACCACAGA AAAGGATGCC
TATGCCTCCA TCGGGGTTTC GTCGCTCATC AAGGTACCGA TCCTCAAAGG CGGAAACCTG
GTCGGTATTC TCTTTGCCCA TGACGACAAG CCCCGGACAT GGAGCCAGGA TGAACTGGAC
TTTACGCGCG GCATTGCCGA CAGAACCTAT GCAGCCCTTG CCAAGGTTCA GGCCGAGGAA
GAACAGGAAC TTCTCAACCA CGAACTGAGC CACCGGCTGA AAAATACGCT GGCCATGGTC
CAGGCCATTG CCGGGCAGAC ATTGAAGGAC GTCTCGGAAA AGGAAGCCGT CAACGCCTTC
CTGGCCCGTC TGCATGCCCT GGGCGCCGCC CATGACGTTC TTCTGCGGCA AAACTGGTCG
GCGGCGAAAA TGCGCGATGT GATCGAGAAA GTGCTGGCCT TGCATGCCGA CGGCGACCGT
ATTTACGTGG ATGGTCCCGA TCTGGCGCTT GGCCCGAAGG CCGGTCTGTC GCTATCTTTG
CTGCTGCATG AACTGGCGAC CAATGCCCTC AAATATGGTG CGCTTTCCAA CGCTAGCGGC
CGCGTTTCCG TCAAATGGTG GATCGCCGAC AACGACGCCA TTCCGACCCT GTCGATGACA
TGGACGGAAA GCGGTGGACC GACCGTGAGC GAACCGACCC GCAAAGGCTT CGGCTCACGC
CTGATCCGCA TGGGACTGGC TGGAACAGGC AATGCCCATA AGGACTATCG CCCGTCCGGC
CTGACGGCAA CGTTCCATGC ACCGCTCACC ACAATCCAGG AAACCGGAGA CTAG
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| Protein sequence | MRQSLNDDQA EQRERRRLEA LRAYDVLDTP REKDFDDIAA LASRICATPI AVVNLIDDSR
QFFKAEVGLG VRETPFDSSF CAKAILEDDF LMIPDASQDS RFNRNPLVTG EPHLRFYAGA
VLKTADNLPI GTVCVLGFEP KQLDELQQDT LKVLARQVMV QLELRKALKE KAREAEVQRR
LSERRLARVT AMEQQDERSR SAQAAGRVGT FELDIATNTM TVSSEFCRVF GIPVQTSYPA
SAIEDLVHED DRGLRSNPVT RREGSASPDV DYRIIRADDD ELRWISRRAR FVHNEKGEIT
RMVGVVFDTT DAKLKEAKKA ALLKLGDELR AASTVEEITQ SAAAILSDGL GVARAGYAVV
DRTDNSFAVA FDWASHGTVS LAGRHSLERF SETIEHLRKG ETLSIPNVAS SKWPTTEKDA
YASIGVSSLI KVPILKGGNL VGILFAHDDK PRTWSQDELD FTRGIADRTY AALAKVQAEE
EQELLNHELS HRLKNTLAMV QAIAGQTLKD VSEKEAVNAF LARLHALGAA HDVLLRQNWS
AAKMRDVIEK VLALHADGDR IYVDGPDLAL GPKAGLSLSL LLHELATNAL KYGALSNASG
RVSVKWWIAD NDAIPTLSMT WTESGGPTVS EPTRKGFGSR LIRMGLAGTG NAHKDYRPSG
LTATFHAPLT TIQETGD
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