| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ddes_1085 |
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| Symbol | |
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| ID | 7284767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011883 |
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| Strand | - |
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| Start bp | 1270700 |
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| End bp | 1272469 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643581886 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
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| Protein accession | YP_002479669 |
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| Protein GI | 220904357 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.348489 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGTC TTAAAGATAT CCAGCAGATT CAATCACTTA TTGCCAAAGG CAAGGGTGCG
GGCTTTTTGA CCTTTGAAGA GGTCAACAAA GCGCTGCCCG TTGAAATGAG CACGCCCGAG
CAGTTTGAAG AGATCATAGG CATCTTTGAA CAGCTGGAAA TCGTTATTGT GGACTCAGAG
AAGGACGGAA AAAAAATTTC GGCCACTGCC TCTGAATCTG ACGAGGAAAT AACCGACAGT
TCCCTTGATC TGTCTGAGGA CGAAGATACT GCGGACTATT CTTCCCGCAG CACAGACCCC
GTGCGCATGT ACTTGCGCGA AATGGGGGCT GTTCCCCTGC TTGACCGCGA TGGTGAAGTT
GTTATCGCCA AAAAGATTGA AATGGGCGAA CAAGACGTGC TTTATGCCCT TGTTGAAGTT
CCTGTGGCAG TTGAAGAGCT GATCAATGTG GGCGAAGACC TGCGCCAGAA CCGCATCAAG
CTCAAGGATG TGGTAAAAAC CATTGAAGAA GACGACCCCA GCGAAGATGA AATGAACCAG
CGTTCGCGCG TCATCCTGCT GCTGGACGAA ATCAAGCAGA CCTTCAAGAA AAAACGCAAG
ATCTATAAAA AACTTGATGT CTGCACCTGC ATGGATCGCC GCGTCACCGC CGTGCAGAAA
GAAATCATCT GCTTCAAGGA AGAAATTGTT ACCCGCCTGC GTGATATCAA GCTGGAAAAA
ACCCTCATTG ACCGCATTAT TGAAACGGTT GAGGACTACG TGCGCCAGAT GCACAACTGC
CAGCGTGACC TTTCTGCCTA CATTCTTGCC ACCGGCCGTA CCCAGGCGGA AATTCAGGCC
ATGTTTGACG GCCTTGAGCA GCGCGAAATC AATCCGATGG ATGCCGCCCG CGACCTCAAG
CTCAGTGTGG ACGAACTCTT TTCCTTCAAG GAAATGATCA TCGGCAAGAT TGAAATCCTC
AACCGCCTGC AGGAAAAATG CTGCCATAAC GTCACGGACC TTGAAGAGGT CCTGTGGCGC
ATCAAACGCG GCAATACGGC GGCCATGCGC GCCAAGCAGG AACTTATCCG CTCCAACCTG
CGCCTTGTGG TTTCCATTGC AAAAAAATAT ACCAATCGTG GTCTCCAGTT CCTCGACCTT
ATTCAGGAAG GCAATATCGG CCTCATGAAA GCTGTGGATA AGTTTGAGTA TCAGCGCGGC
TATAAATTCT CTACGTATGC CACATGGTGG ATCCGGCAGG CCATTACCCG CGCCATTGCC
GACCAGGCGC GCACCATCCG TATCCCCGTG CATATGATTG AAACCATCAA CAAGCTCATA
CGCACATCGC GCTACCTTGT GCAGGAGCTG GGCCGCGACC CCACGCCCGA AGAAATCGCC
GAACGTATGG AATACCCAGT GGAAAAGGTC AAAAAGGTAC TCAAAATCGC CAAAGAACCC
ATTTCTCTGG AAACTCCTAT CGGCGATGAA GAAGATTCAA GCCTGGGCGA TTTTATTGAA
GATAAAAAAG CTGTGGCCCC GGCAGAAGAA GTTATCAACA CCAAGCTGTC GGAACAGCTG
GCCGCAGTGC TGGCAGACCT CACCCCTCGT GAGGAGCAGG TTTTGCGCAA ACGCTTCGGC
ATTGCTGAAA AGAGTGATCA CACCCTTGAA GAAGTGGGCA AGCTCTTTAA CGTGACCCGC
GAACGTATCC GGCAGATCGA GGCCAAGGCT TTACGCAAAC TGCGTCATCC CGTGCGCAGC
CAGCCCCTGC GCTCTTATTA CGAAAACTGA
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| Protein sequence | MSSLKDIQQI QSLIAKGKGA GFLTFEEVNK ALPVEMSTPE QFEEIIGIFE QLEIVIVDSE
KDGKKISATA SESDEEITDS SLDLSEDEDT ADYSSRSTDP VRMYLREMGA VPLLDRDGEV
VIAKKIEMGE QDVLYALVEV PVAVEELINV GEDLRQNRIK LKDVVKTIEE DDPSEDEMNQ
RSRVILLLDE IKQTFKKKRK IYKKLDVCTC MDRRVTAVQK EIICFKEEIV TRLRDIKLEK
TLIDRIIETV EDYVRQMHNC QRDLSAYILA TGRTQAEIQA MFDGLEQREI NPMDAARDLK
LSVDELFSFK EMIIGKIEIL NRLQEKCCHN VTDLEEVLWR IKRGNTAAMR AKQELIRSNL
RLVVSIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYQRG YKFSTYATWW IRQAITRAIA
DQARTIRIPV HMIETINKLI RTSRYLVQEL GRDPTPEEIA ERMEYPVEKV KKVLKIAKEP
ISLETPIGDE EDSSLGDFIE DKKAVAPAEE VINTKLSEQL AAVLADLTPR EEQVLRKRFG
IAEKSDHTLE EVGKLFNVTR ERIRQIEAKA LRKLRHPVRS QPLRSYYEN
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