| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0976 |
|---|
| Symbol | |
|---|
| ID | 7272756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1007205 |
|---|
| End bp | 1008188 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643569615 |
|---|
| Product | Radical SAM domain protein |
|---|
| Protein accession | YP_002466051 |
|---|
| Protein GI | 219851619 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
|---|
| TIGRFAM ID | [TIGR03550] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.401774 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.977803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCAGG GGGTAATCAC GTTCTCAAGG AACGTATTTC TACCATTGAC TACTGTCTGT
CAGAACCATT GCGGGTACTG CAGTTTCTGG ACTCCTATAC AGAAAGGGTG CATAATGGGG
AGAGAGCAGG TTATCGAGAC ACTCCGGCTG GGCGCAGGTG CAGGATGCAC GGAAGCGCTC
TTCACATTTG GCGAACGACC GGAGATGGTC CCGGGTTTCT CAGAACACCT GGCTGCGATC
GGGTATTCTT CAATTCTCGA CTACTGCTAT GACCTCTGCA AAGAGGCACT TCGGTTCGGG
ATCCTTCCGC ATACCAATGC CGGGGTGCTC AGCACAGGCG AGATGGAACG GCTTCGCGAG
GTGAATGCAT CGATGGGCTT GATGCTCGAG ACAACGGCTG ATGTGCCGGC TCATCAGGGT
TCAATCGGGA AATCACCTGC TGAGCGTCTG AGCATGATCG CGCGCGCAGG AAAACTCAGG
ATCCCGTTCA CAACCGGGAT TCTGCTGGGG ATCGGTGAGA CGACCCGCGA CCGTGAAGAG
TCTCTGGAAG CGATCGCCGA CCTGCAGCGG GAGTACGGCC ATATCCAGGA GGTGATCGTC
CAGAACTTCT GTCCCAAGGA GGGGACACCG ATGGCGGATG TCACTCCTAT CACCACAGAA
ACGTTCTGCG AGACGGTTCG AATGGCCAGG GCTATCCTCC CGGAGGAGGT GGCGGTTCAG
GTCGCGCCCA ACCTTGCCGA TGCAGGTGTG CTCGTCGGGT GCGGTGCGAA TGACCTCGGC
GGCATCTCCC CGGTTACGAT CGATTACGTG AACCCGGAAC ACCCCTGGCC TGCTATCGAC
CGTCTCACCG AGGTTGCAGG CGATGCAGTG CTCAGAGAGC GGCTCTGTAT CTATCCCCAG
TATATCACGC AGGGCTGGTA TCCTCCTTCG ATGGAACCGC TGATCAGATC ATTATCAATA
AAAATCCAGG AGAGATCTCT GTGA
|
|---|
| Protein sequence | MHQGVITFSR NVFLPLTTVC QNHCGYCSFW TPIQKGCIMG REQVIETLRL GAGAGCTEAL
FTFGERPEMV PGFSEHLAAI GYSSILDYCY DLCKEALRFG ILPHTNAGVL STGEMERLRE
VNASMGLMLE TTADVPAHQG SIGKSPAERL SMIARAGKLR IPFTTGILLG IGETTRDREE
SLEAIADLQR EYGHIQEVIV QNFCPKEGTP MADVTPITTE TFCETVRMAR AILPEEVAVQ
VAPNLADAGV LVGCGANDLG GISPVTIDYV NPEHPWPAID RLTEVAGDAV LRERLCIYPQ
YITQGWYPPS MEPLIRSLSI KIQERSL
|
|---|
| |