Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpal_0018 |
Symbol | |
ID | 7270130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosphaerula palustris E1-9c |
Kingdom | Archaea |
Replicon accession | NC_011832 |
Strand | - |
Start bp | 16309 |
End bp | 18897 |
Gene Length | 2589 bp |
Protein Length | 862 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643568677 |
Product | SMC domain protein |
Protein accession | YP_002465137 |
Protein GI | 219850705 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0623828 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCACC TGGTACACCT CCGGATCCAG AACATCCGGA GTTATGGCGA GGAACCGATC ACGATCGACT TCTCACCCGG GATCTCCCTC TTCTCAGGCG ACATCGGGAG CGGAAAGTCG ACGATCCTCT CGGCCATCGA GTTCGGCCTC TTCGGCCTCG GCGACGTGAA GTCGACCCAC CTCCTCAGGC ACCACCAGAA ACGCGGGGAG GTCAGCCTCA CCTTCATCAC TGGCGAGGAG GAGTACACCA TCAACCGGAC ACTGGTCAGG ACCAAGAAGG GGGTGAACCA GGGGCCGTGC TCACTAACCG GGCCGAATGG CGAAGAGGCC TACGCACCCG CCGACCTTAA ACCGAAGGTG CTCGCGATCC TCGGGTTCCA CGAACAGCCC GACCCCAAGG CCACCTCTCG AATCTTCCGG TACGCAATCT ACACTCCCCA GGAGGCGATG AAAGCGGTCC TCTCGATGAA GGAGGAGCAG CGGCTCGACA TCCTCAGAAG GGCATTTGGG ATCGAACAGT ACCGGTGGGC GGCCACCAAC ACCGAGGAGG CTGTGATCAG GCAGTGGCTG AACACGGAGA TCGAAATCTG TACCCGCCTC TGCACCGGAT TGGAGGAGGA CGAGCGGCAG TATGAAGAGG TGCTGCTCGG ATGCCAGCAG GCCAGGGCCG GGGTGACAGA ACAGGCAGCA CTCCTCGCTA CCCTGACCGG GGCCGTCACC CGAATCGACG AGGCGATCGC CTCCCTCCTT CCATTCCAGG AGAAGGTCGG CACCCTCCGA GGTTCCCTCC CCGGTCTGAC CTCGGCCAGA GAAGCCAGGC AGGCACAGCG CCAGGGGCTG CTCGATGAAG AGAAGCGGAT CGATAGAGAT CTCATCTTGA TCGCAGGTGA CGAGGAGGCC CTGGCCCAGC TAAAGCCGAA GTATCAGCAT CTCCTGGAAC AGAAACGGGC GATAGTCACC CTTGAAGAGC GTTATCTCTA CCACCGGGAT CTGCAGGGTA GGGAAGCAGC CCTCACAGCC CGGATCAGAG CTGAAGAGGA ACACCTGAAG GAGCGGGCAG GCCGGTGCCA GAGAGACCGG GAGCGGGCGC AGGCGATCCA TGATGAACGG CAGAATCTGG CCCGACAGCA GCAGACGATC AGCGCGGCCC TAAAACCCCT CAAAACGGCG GTGGCGCGGT TGCCGGAGGT GACCGCCCGG GTGAACACCC TGGTTCAGGG GAGGGAGAGG ATCCGAGTTG AACGGGAGAC CCAGGAGAGG AGCTTGAAGA CCCTGAAGAC CGAATGGGAG CAGATTGCCG CCATCGGGGA GGGAGCCACC TGCCCCCAGT GCCAGCAGAC CCTGACCAGA GAGCACCTGG TCGCGATGGA GCAGGAGACC TGGGCGAAGG CCGACGAGAT CCTGGGCTGG CAGCGGGATC TCGCCGGACT GCTCAAGGAG GCCGATGAGA TGATCAGCAG TGCCCGGATC GAGCAGGCAG CGCTCGAAGA GGAGCAACGG ACCTGCAACA GGAAGAAGAC CGAGCTCGCT GGTATCACAG CCAGAATAGG CGGACTGCTA CAGGAGGAGG AGCGGCTCGG CACTGCAGTC GACGAGGAGC AGAAGATCCG GGAGGCGCTC ACCACCGGCA CCTTCGCCCT GGACCTGCAA CAGCAGCGTC AGGATGTCAC CTCCGCGATC GAAGCTCTCA CCGACGAGGT GACGAGGTAC ATCCAGGCAA AGAAAACGAT CCGGGACCTC GAAGAGGAGG AGGTCGAGAA GACCTTTTCA GCCCTGAACG CCAGAATCAA AACAAAACAG GGGCTCCTTG AGCGGAGGAA CGCCAACGCG GAAGCGATCC GATCGGTCGA AACTGATATT CTGGACCTTG ACAAAGCGAT CAGAACAGGA GAGGAAGCCC TCGCCGACGC CGAGGTGAAA CTTCAGGAAC TTTTTGACCT GGAGACGACC GCGACCAGGC AGCGGGATGT CATCCAGGAA CAGCAGCAGG TGCTGGACCA ACTGCGGCGG GAGGTGGAGT ACCAGACCAG AACCAGCGAA GATCTGAAGA AGGTTATCCT GGAGAAACGA GCGAAGGCCG GTACGATGCA GGTCTTCCAA GAGCAGCGGC GATGGCTCCG CGATCACTTC CTCCCAGCCG TCGAATCGAT CGAACGATCC AGGCTGGCCC AGATCAACGA GACCTTCAAC TGCTTCTTCC AGCAATGGTT CACCGACCTG ATCGCAGCGG AGGAGATCTC GGTCAGGGTC GACGAAGCCT TCACCCCGCT GGTCGAACAG GACGGCTTTG AGGTGGATGC AGACAGCCTC TCAGGTGGGG AGCGGACCTC GCTGGCGCTG GCCTACCGAT TGGCCCTGAA CACCATCGTC AGAGATGAGA GCGGGGCCGA CCAGAAGTCC CTGCTGATCC TTGACGAACC GACCGACGGG TTCAGCGCCG GTCAGCTCTA TCGGCTGCGG GATATCCTCC TCGACGCCGG TTGCGACCAG TTGATCATGG TATCGCACGA GAAAGAACTC GAAGGGTTCG TCGATACACT CTACCGGGTC ACCAAGGTAG ACGGGATATC CTCAGTCGTC AGACGGTAG
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Protein sequence | MLHLVHLRIQ NIRSYGEEPI TIDFSPGISL FSGDIGSGKS TILSAIEFGL FGLGDVKSTH LLRHHQKRGE VSLTFITGEE EYTINRTLVR TKKGVNQGPC SLTGPNGEEA YAPADLKPKV LAILGFHEQP DPKATSRIFR YAIYTPQEAM KAVLSMKEEQ RLDILRRAFG IEQYRWAATN TEEAVIRQWL NTEIEICTRL CTGLEEDERQ YEEVLLGCQQ ARAGVTEQAA LLATLTGAVT RIDEAIASLL PFQEKVGTLR GSLPGLTSAR EARQAQRQGL LDEEKRIDRD LILIAGDEEA LAQLKPKYQH LLEQKRAIVT LEERYLYHRD LQGREAALTA RIRAEEEHLK ERAGRCQRDR ERAQAIHDER QNLARQQQTI SAALKPLKTA VARLPEVTAR VNTLVQGRER IRVERETQER SLKTLKTEWE QIAAIGEGAT CPQCQQTLTR EHLVAMEQET WAKADEILGW QRDLAGLLKE ADEMISSARI EQAALEEEQR TCNRKKTELA GITARIGGLL QEEERLGTAV DEEQKIREAL TTGTFALDLQ QQRQDVTSAI EALTDEVTRY IQAKKTIRDL EEEEVEKTFS ALNARIKTKQ GLLERRNANA EAIRSVETDI LDLDKAIRTG EEALADAEVK LQELFDLETT ATRQRDVIQE QQQVLDQLRR EVEYQTRTSE DLKKVILEKR AKAGTMQVFQ EQRRWLRDHF LPAVESIERS RLAQINETFN CFFQQWFTDL IAAEEISVRV DEAFTPLVEQ DGFEVDADSL SGGERTSLAL AYRLALNTIV RDESGADQKS LLILDEPTDG FSAGQLYRLR DILLDAGCDQ LIMVSHEKEL EGFVDTLYRV TKVDGISSVV RR
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