| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0001 |
|---|
| Symbol | |
|---|
| ID | 7271383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 442 |
|---|
| End bp | 1704 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643568660 |
|---|
| Product | orc1/cdc6 family replication initiation protein |
|---|
| Protein accession | YP_002465120 |
|---|
| Protein GI | 219850688 |
|---|
| COG category | [L] Replication, recombination and repair
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1474] Cdc6-related protein, AAA superfamily ATPase |
|---|
| TIGRFAM ID | [TIGR02928] orc1/cdc6 family replication initiation protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00890369 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCTTT TTAAGAAGTA TCTGACTGAT CGGAATAAAA TTTTCAAGAA CAGGGAGGTT
CTCAGGCATT CGTACCGTCC TCATATCCTG CCTCATCGTA TGCCCCAGAT CGATGAGATC
GCCTCAATTT TGGCCCCCTC CCTTCGCAAC GAGACCCCCT CAAACATCCT GATCTATGGA
AAAACTGGCA CCGGGAAGAC TGCAAGTGTC AGATATGTGG GTTCTGAGCT AGAAAAAGCG
TCAAGTCAGA ATGTGGCTAC CTGTGCTGTG GTCCATATCA ACTGCGAAGT AATCGACACC
CAGTACCGAG TGCTGGCTCA GATCGCCAAG GATATCGAGA GACCTGACGA AACCCCCTCA
GACAAGCTCA GACCCCATAT CCCGATGACC GGCTGGCCGA CAGACCAGGT TTATATGGAA
CTGAAGAATC AGCTCGAGGC ACGCGGCGGT GTACTGGTGA TCGTCCTCGA CGAGATCGAC
AAGCTGGTCA AGAAGAGCGG GGACGACACC CTCTACAACC TGACCAGGAT CAACTCTGAT
CTCCACAGTT CCCGGGTCTG TATCATTGGC ATCTCTAATG ACCTCAGCTT CAAGGATTTT
CTGGACCCGC GGGTCCTCTC CTCCCTATCA GAGGAGGAGA TCGTCTTTCC CCCGTACAAT
GCTCCGCAGC TCTGCGATAT TCTCCAGCAA CGTGCAGAGA AGGCGTTTGT CCTTGAGACA
CTCGATGAAG GGGTGATTCC GCTCTGCGCG GCTCTGGCTG CCCAGGAACA TGGAGACGCA
CGCCGTGCGC TCGATCTACT TCGGATCTCC GGCGAACTCG CCGAGCGCGA GGAGGCTGAG
AAGGTCGCTG AGAGCCATGT CAAGAGTGCT CAGGCTAAGA TCGAGACCGA CTCGATGATC
GAGTGCATCT CGACCTTGCC GACGCAGTCC AAGGTGGTTC TCTACTCGAT GCTCCTCCTC
GAGCAGCTCG GGCATCTGAT CTTCACCTCC GGGGAGGTCT GCAGAGTCTA CCAGGAACTG
GCCTGCCACC TGGAGATTGA TGTGCTGACC AATCGGCGGA TCACTGATCT GATCTCAGAG
CTGAACATGC TCGGGGTGAT CAACACCCGG GTGGTCTCCC GCGGCAGGTA TGGACGGACC
AAGGAGATGT GGTTCGATGC AAACTCGACC AAGATCCAGG AAGTGATCCA GAAGGACCCA
CGGCTCACAG AACAGGGGCT CGGGCAGATG GATCGCACCT GGCTGAAACA GACATTTAGG
TGA
|
|---|
| Protein sequence | MGLFKKYLTD RNKIFKNREV LRHSYRPHIL PHRMPQIDEI ASILAPSLRN ETPSNILIYG
KTGTGKTASV RYVGSELEKA SSQNVATCAV VHINCEVIDT QYRVLAQIAK DIERPDETPS
DKLRPHIPMT GWPTDQVYME LKNQLEARGG VLVIVLDEID KLVKKSGDDT LYNLTRINSD
LHSSRVCIIG ISNDLSFKDF LDPRVLSSLS EEEIVFPPYN APQLCDILQQ RAEKAFVLET
LDEGVIPLCA ALAAQEHGDA RRALDLLRIS GELAEREEAE KVAESHVKSA QAKIETDSMI
ECISTLPTQS KVVLYSMLLL EQLGHLIFTS GEVCRVYQEL ACHLEIDVLT NRRITDLISE
LNMLGVINTR VVSRGRYGRT KEMWFDANST KIQEVIQKDP RLTEQGLGQM DRTWLKQTFR
|
|---|
| |