| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_3741 |
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| Symbol | |
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| ID | 7267814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chloroflexus aggregans DSM 9485 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011831 |
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| Strand | + |
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| Start bp | 4558347 |
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| End bp | 4561895 |
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| Gene Length | 3549 bp |
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| Protein Length | 1182 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643568548 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002465013 |
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| Protein GI | 219850580 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.34254 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCAT TACCGGCAGT TTCGTGGCAA TGCTCAAGTG TCAGCGCGTT GGGTACAGTG
CTCGCCGAGC TACCTGTACT CACGAGATTG GCAGCCGCTC TACGCCCCGG TTATCAGACG
ATAGCCCCGG TGCCAACTGC GGCTCGCCCG GCCTTGATCG CTGCTTTAGC CCGTCGTTGG
CCGTTGCCGG TTGTGTACGT GACTCTGAGT GCCGAGAGTG CGCGCCGCGC CGTCGATGAC
CTATGCCAAT GGTTATCTCC CGACCGTGTT TGGCTGTTTC CCGCCGCCGA TGCACTCCCT
TATGAGCACA TGTCCGCCGG GAGCGATGTG ATCGCGCGTC GGTTGGCAGT GCTGCGTGGC
TTGCAAACCG GTCAGTGGTC GGGCGTTATT GTGACGCCGG TTAAGGCGCT GATGCAGCCA
ACAATGCCTC CGTCCGAGTT AGCCACAGCG ACGATCCGAT TGCGGCGTGG TATGCAGATG
CCGATTGACC AACTTCTGCA TAGATTACTG GCAAGCGGCT ATCAGCGTGC TGCGATGGTC
GAAACCCCCG GTGAGGTAAG CCGCCGTGGT GCCATTCTCG ATGTTTGGTC GTCGGGTGAT
GAGTTGCCAT TGCGGATCGA GTGGTTCGAT GATGAAATTG ATAGTCTGCG CCGGTTTGAG
CCGGCCACGC AACGCAGTGA GCAGCGGTTG GAACAGGCTG AGATTGGCCC ACCACACGAG
ATTCCGCTCT GGCAGCGTGA AGAGGCTTTA CGTCGAATTG ATGCGCTCGA TCTGCGTGGA
TTACGTCGTG AGGTGGCTGA AGAGTGGGCA GTCGCGCGTG AACAACTGGC AGCCGGCCAG
CGCTTTGAAG GTCGCGCTTT CTACGCGCCA TTTTTCTTTA CCCAACCGGC TACCATGCTC
GATTACTTAC CGGCAGGGAG TTTGGTGACA CTTGCCGAAG CCCATCTCCT CGAACAGCAC
GCCACCGAGA TCGACGTGCA AGCCGCTACG TACCGCGATC AATTAGTGAC GATCGGTGAA
CTACCGCCCA ATTTTCCGCG GCCCTATCTG CGCTGGGAAG AGCTTGAGCT ACTCGGTCAG
ACCAAGCTGG TCGTGGCCGA TCTGACCCAC AACGAGTATC CCGACGCACT CGTTCCACCG
CTGTTTGGGG TACCGCCGTT GTATGGTGGT CAGATGCGTC GCCTTATCGA GGCGATTGTC
GAGCAGGTAC AGGCCGGTGA GATGGTGGTG GCAGTGACCG CGCAAGCCGC TCGGTTGCAG
GAGCTGCTTG GAGAACGGTT GATGGGCGAG ATTGCAAGCG GGCGCTTTAT CGCCATTCTC
GGTGGTCTTG AAGCCGGCTT TACCGTACCT GATCTGCGCC TAACCCTGCT CACCGATAGC
GAAATCTTTG GGATACGCCA ACGTCGTCCG CTCAGTGAAC GTCGGCGTAA GACGACGGTA
GCCGATCGCA CTGCCTTTCT GCGCTCGCTC AAACCCGGTG ATTATGTGGT GCATATCGAG
CATGGCATCG CCGTGTTTGA TGGCATGATC CGCCGTACCG TCGGTGAGGT TGAGCGTGAA
TATCTCGTGT TGCGCTACGC CGGCGAAGAT AAAATCTACG TTCCGGTCGA CCAAATTGAT
CGGGTCACGC GCTATATCGG TGCCGGCGAT GGCCCCCCGA CCCTCACTCG GCTTGGCACT
CAAGATTGGG AACGCACAAA GCGTAAAGTG CGTGCTGCGG TGCAAGAGCT GGCCGAGGAA
CTGCTCCATC TGTATGCCCA ACGTCAGCTC AAGCCCGGTT TTGCATTTTC ACCTGATAAC
GAGTGGCAGC GCGAGTTGGA AGCTAGCTTT CCCTATCTTG AGACCGATGA CCAACTACGC
GCTATTGCCG AGGTGAAGGC TGATATGGAG CGCCCCATCC CGATGGATCG ATTAGTTTGC
GGTGATGTTG GGTTTGGGAA GACCGAGGTA GCCCTGCGCG CTGCGTTTAA AGCCGTACAA
GACGGAAAAC AGGTAGCAAT CCTCGTACCG ACGACGGTGT TGGCCCAACA GCATTTTGAT
ACGTTCCGTA AACGGATGGC GGCATTTCCG GTGACGGTCG AAATGCTCTC ACGCTTTCGC
TCGCCGAAAG AGCAAGACGG CATCGTGCGC GATTTGGCCC GAGGCAAGAT CGATATTATC
ATCGGTACGC ATCGATTGCT CTCCAACGAT GTTGTGTTTC GTGATCTCGG TTTGGTGATC
GTTGATGAAG AGCAACGGTT CGGTGTGCGG CACAAAGAGC GGCTCAAGCA GTTGCGAGCC
GAGGTAGATG TGTTGACGCT GACGGCCACA CCCATCCCGC GCACCTTACA CATGGCGCTG
TCGGGCATCC GTGATCTGAG TGTGATTAAT ACACCGCCTG AAGACCGTCT CCCGATCAAA
ACGTATGTCG TCCCGGCCGA TGATCATCTG ATCCAAGAGG TGATCCGACG CGAACTCGAA
CGTGAGGGAC AGGTGTACTT TGTCCACAAC CGGGTACAGA GCATTTACCA TGTGGCAGAA
CGGTTGCGCC GGCTGGTGCC GGAAGCGCGG ATTGCGGTCG GTCACGGTCA GCTCGCCGAG
CGTAATTTGG AACGAGTGAT GATGGATTTC TTCGAAGGGC GGTACGACGT GCTCGTCTGT
ACCACGATCA TCGAAAGTGG TCTTGATGTT CCCAATGCGA ATACCATCAT CATCGATGAT
GCAACGCATT ACGGCCTAGC CCAGCTTTAT CAGTTACGTG GCCGCGTCGG GCGTGGTGCA
ACACGGGCGT ATGCGTACCT TCTCTACAAC CCAGCCGCCC CTATGACATC CGATGCCCGT
CAACGACTAG AGGCGATCCA AGAAGCGACC GAACTTGGTG CCGGATTCCG CGTCGCAATG
CGTGATCTTG AAATACGAGG CGCCGGTAAT CTGTTAGGTT CTGAGCAGTC GGGTCACATT
GCTGCGGTGG GTTTCGATCT CTATTCACGC CTCCTTGAGC AGGCTGTGCA GCAACTCAAG
CGGGATGTCG ATGAGCTGAC CGTTGATCGA GGATTCACAC CTTCCCCAAC GGAGATGGCG
GCCGGCTTGT GCGCGCCTAC CGTGTCGGAA AAGGTGTTGG TGGCACCGTT GGTGACCATC
GATTTACCGT TGACCGCCTA CCTTCCCCCC ACCTATATTG CTGATGAGAC GGTGCGATTG
GCGGTGTACC AGCGGATGAT CGATGCCGAC ACCATTGAGG AAGTGCGTAG TCTGCGCCAA
GAGCTGATCG ACCGCTTTGG CGGGCCGCTG CCAGAGCCGG TGTTACACTT GATCCTCTGG
TTGCAAATAA GGTTCTTGGC GCTGCAAGCC GGTGTAGCGT CGATCACGAC GGAAGGTGAT
GTGTTTCTCA TCCGCCTGAT GACCAGCTTA ACGCCGGCAA TGCGTGATCG ACTGCGGCGA
CGGTTTCCGC GAGATGCGGC GCTCAAGCTT GGGCAGCAAT CGATCCGGCT AGAGCGACGG
TTGGTTGGGG CACAGTGGCC AGAACGCCTG TTGGCAGTTA TTGAAGTATT GGTGGCTGAA
GCAGGTTGA
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| Protein sequence | MTSLPAVSWQ CSSVSALGTV LAELPVLTRL AAALRPGYQT IAPVPTAARP ALIAALARRW
PLPVVYVTLS AESARRAVDD LCQWLSPDRV WLFPAADALP YEHMSAGSDV IARRLAVLRG
LQTGQWSGVI VTPVKALMQP TMPPSELATA TIRLRRGMQM PIDQLLHRLL ASGYQRAAMV
ETPGEVSRRG AILDVWSSGD ELPLRIEWFD DEIDSLRRFE PATQRSEQRL EQAEIGPPHE
IPLWQREEAL RRIDALDLRG LRREVAEEWA VAREQLAAGQ RFEGRAFYAP FFFTQPATML
DYLPAGSLVT LAEAHLLEQH ATEIDVQAAT YRDQLVTIGE LPPNFPRPYL RWEELELLGQ
TKLVVADLTH NEYPDALVPP LFGVPPLYGG QMRRLIEAIV EQVQAGEMVV AVTAQAARLQ
ELLGERLMGE IASGRFIAIL GGLEAGFTVP DLRLTLLTDS EIFGIRQRRP LSERRRKTTV
ADRTAFLRSL KPGDYVVHIE HGIAVFDGMI RRTVGEVERE YLVLRYAGED KIYVPVDQID
RVTRYIGAGD GPPTLTRLGT QDWERTKRKV RAAVQELAEE LLHLYAQRQL KPGFAFSPDN
EWQRELEASF PYLETDDQLR AIAEVKADME RPIPMDRLVC GDVGFGKTEV ALRAAFKAVQ
DGKQVAILVP TTVLAQQHFD TFRKRMAAFP VTVEMLSRFR SPKEQDGIVR DLARGKIDII
IGTHRLLSND VVFRDLGLVI VDEEQRFGVR HKERLKQLRA EVDVLTLTAT PIPRTLHMAL
SGIRDLSVIN TPPEDRLPIK TYVVPADDHL IQEVIRRELE REGQVYFVHN RVQSIYHVAE
RLRRLVPEAR IAVGHGQLAE RNLERVMMDF FEGRYDVLVC TTIIESGLDV PNANTIIIDD
ATHYGLAQLY QLRGRVGRGA TRAYAYLLYN PAAPMTSDAR QRLEAIQEAT ELGAGFRVAM
RDLEIRGAGN LLGSEQSGHI AAVGFDLYSR LLEQAVQQLK RDVDELTVDR GFTPSPTEMA
AGLCAPTVSE KVLVAPLVTI DLPLTAYLPP TYIADETVRL AVYQRMIDAD TIEEVRSLRQ
ELIDRFGGPL PEPVLHLILW LQIRFLALQA GVASITTEGD VFLIRLMTSL TPAMRDRLRR
RFPRDAALKL GQQSIRLERR LVGAQWPERL LAVIEVLVAE AG
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