Gene Cagg_1906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_1906 
Symbol 
ID7266397 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp2336435 
End bp2337160 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content55% 
IMG OID643566743 
ProductRibonuclease H 
Protein accessionYP_002463237 
Protein GI219848804 
COG category[L] Replication, recombination and repair 
COG ID[COG0328] Ribonuclease HI 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.26772e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.35014 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAACA ACAAACAATA CTATCTCGTG ATACGCGGAC ACCGACCAGG CGTATATCGC 
CAATGGCATG GGGAGGAAGG TGCGGCGAAA CAAGTACAAG GTTTTTCCAA CGCGCTCTAT
AAAGGGTTTG CTACCCTTGC TGACGCGAAA GCATGGGTTG CTACGTTGCC GGAATCAGAG
CGATTGTCGG CGGAGGCGTG GTTAGCCGAA CAGCTCGATC ATGAACCGGA AGCGGCGGTA
TCGCCTGATA CTGTGGTCAT GTATACTGAC GGAAGTGCGC TCGGCAATCC GGGTCCGGGT
GGATACGGGG TGGTATTACG CTACAATCAG CATTACAAAG AGCTGTCCGG CGGATTTCGG
CGTACCACCA ACAATCGGAT GGAACTGATG GCGTGTATTG CCGGGCTACG CGCACTCAAA
CGACCGATGC GGGTTGTCAT CTACAGTGAC TCGAAGTATG TGGTGGACGC AGTACAAGAA
GGGTGGGTGC AGCGTTGGCA AGCCAAGAAT TGGATGCGTA CCTCCACCGA ACCGGCGCAG
AATGCCGATC TGTGGGCCGA ACTGGTACAG CTATGTACGA TCCATCAGGT ACAATTCGTG
TGGGTACCGG GCCACAGCGG GGTGCCCGAT AACGAGCGGT GTCATCAGTT AGCTACTGCA
GCAGCCCAAC AGCCCAATCT GCCACCCGAC ATCGGCTTTG AGCAAGCCGA CGAGCAGAAA
CCATAA
 
Protein sequence
MSNNKQYYLV IRGHRPGVYR QWHGEEGAAK QVQGFSNALY KGFATLADAK AWVATLPESE 
RLSAEAWLAE QLDHEPEAAV SPDTVVMYTD GSALGNPGPG GYGVVLRYNQ HYKELSGGFR
RTTNNRMELM ACIAGLRALK RPMRVVIYSD SKYVVDAVQE GWVQRWQAKN WMRTSTEPAQ
NADLWAELVQ LCTIHQVQFV WVPGHSGVPD NERCHQLATA AAQQPNLPPD IGFEQADEQK
P