Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dhaf_1860 |
Symbol | |
ID | 7258829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfitobacterium hafniense DCB-2 |
Kingdom | Bacteria |
Replicon accession | NC_011830 |
Strand | + |
Start bp | 1986543 |
End bp | 1988177 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 643561757 |
Product | extracellular solute-binding protein family 5 |
Protein accession | YP_002458337 |
Protein GI | 219667902 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.44883 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGAAAC AATGGATCAA AACCAAACTG ACAGCAGGGC TGATGGTTAT TTCGCTTCTT GCCGCAGGTT GCTCTGCACA AACACCGGCG GACTCAGCCC AATCTTCCGG CAACCCTTCA GCTGCAAAAG ACGAAGTCAT CGTCGCCGTG GGCGGGGAGA AGGAATCGGG CTATGACCCT TGCACCGGAT GGGGCAGCCA CGGTACTCCG CTTTTTCAAA GTAAGCTGCT GGATACGGAT ACCAATAACC AGTTGAAAAA TGACCTTGCC ACCGGCTATG AAGTCAGCGA GGACGGCCTT ACCTGGACTT TCACTGTTCG AGATGATGTC ATTTGCCACG ACGGTGAAAA GCTCACCGCC AAGGATGTGG CCTTTACTTA CAACAAAACC AAGGAAAACG GCATTTCCAC CATTGATCTG ACCCTGCTGG ACAAGGCCGA GGCCATTGAT GATACGACGG TCATGTTCCA TATGAAATCC CCTATGTCCA CCTTTATCTA TCAGACGGCC GCCCTGGGAA TTGTACCGGA GCATGCTTAC AGCGATCCGG CCGCTTATGC CCAGGCGCCC ATCGGTTCCG GTCCTTATAA ATTCGTACAG TGGGATAAAG GGCAGCAGCT GATTGTGGAG GCTCATGAGC AATATTACGG CGGGAAGCCC TCCTTCAAAC GCCTTGTGCT CCTGTTCCTC AGTGACGATG CGGCCTATGC GGCATTGCAG GCCGGACAAG TCGATGTAGC GAAAATCTCA GAAAATCTGG CGGTCAAGGG AATGCCCGGC TACAATCTGG TCGACTGCAA AACCAATGAT TTCCGTACAG TTGCTTTGCC TGTGCAAAAG CCTGGTGAAA CCAGCAAAGA AGGGTACCCC ATCGGCAATG AAGTGACCAG TGATCCCGCC ATCCGCAAGG CGTTGGCCAA CGGAATCAAC CGTCAGAAGA TTATCGATAC GGTGCTCAAC GGTTATGGAG ACGTCGCCTA TACCATTGCT CAGGGCCTGC CCTGGGATAA CAAAGAGGTT ATCCTCACCG ACGGCAATGT GGAAGCTGCC AAGCAGATTC TGGAAAACGC CGGCTGGGTG GATACGGACG GCGATGGGAT CCGCGAAAAG AATGGCTTGA AAGCGGAGTT CAGTTTGATC TATGCCTCGG ACGATTCGAC CCGCCAATCG ATTTCCATGG CTTTCAAAGA GCAGGCCAAG GCCTTTGGCA TTAATGTGAT TACCGAAGGG CTTTCCTCCG CCGACCGTAA CCCCCGCAAG CATAAGGACG CCTTTATGCT GGGGGGCGGC GATTATAACC CCACTCCTGT ATACAATGCA CTTTATGGCG CTTATGCGGC CAAAGGCGGC TGGTATAATA TTGTTGCCTA CAAAAATGAA AAAGTGGACA AGTATCTGGA GGCAGCCGTA GCGGCAACTA CACAGGAAGA AGCCAATCAA TACTGGCAGA AAGCTCAGTG GGATGGAACC ACGGGAGGTA GTATCCTTGG TGACGCGCCC TATATTTATA TCGTCAATAT CAGCCATCTG TATTTTGTCC GGGATGGAAT CAGCATCGGG GAACAGAAGA TCCATCCTCA CGACCACGGC TTTGCGGTAT TGGGCAACAT CATGGATTGG AGCTCTGTGA AATAA
|
Protein sequence | MKKQWIKTKL TAGLMVISLL AAGCSAQTPA DSAQSSGNPS AAKDEVIVAV GGEKESGYDP CTGWGSHGTP LFQSKLLDTD TNNQLKNDLA TGYEVSEDGL TWTFTVRDDV ICHDGEKLTA KDVAFTYNKT KENGISTIDL TLLDKAEAID DTTVMFHMKS PMSTFIYQTA ALGIVPEHAY SDPAAYAQAP IGSGPYKFVQ WDKGQQLIVE AHEQYYGGKP SFKRLVLLFL SDDAAYAALQ AGQVDVAKIS ENLAVKGMPG YNLVDCKTND FRTVALPVQK PGETSKEGYP IGNEVTSDPA IRKALANGIN RQKIIDTVLN GYGDVAYTIA QGLPWDNKEV ILTDGNVEAA KQILENAGWV DTDGDGIREK NGLKAEFSLI YASDDSTRQS ISMAFKEQAK AFGINVITEG LSSADRNPRK HKDAFMLGGG DYNPTPVYNA LYGAYAAKGG WYNIVAYKNE KVDKYLEAAV AATTQEEANQ YWQKAQWDGT TGGSILGDAP YIYIVNISHL YFVRDGISIG EQKIHPHDHG FAVLGNIMDW SSVK
|
| |