| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0104 |
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| Symbol | rpsD |
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| ID | 7171978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 113034 |
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| End bp | 113660 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643538597 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_002434533 |
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| Protein GI | 218885212 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 0.166577 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGGCTAAGT ACAATGACGC AAAGTGCCGG ATGTGCCGGC GTGAAGGCAC CAAGCTTTTC
CTCAAGGGCG ACCGCTGCTA CACCGACAAG TGCGCCTACG ACCGTCGTCC TTACGCGCCC
GGTCAGCACG GTCGCGCCCG CAAGAAGGTG AGCGACTACG CCGTCCAGCT GCGCGAGAAG
CAGAAGGTCC GCCGCGTGTA TGGCGTTCTT GAACGCCAGT TCCGCGGTTA CTTCCACAAG
GCCGACATGG CCAAGGGCGT GACCGGCGCC AACCTGCTGG CCATTCTCGA ACGCCGCCTC
GACAACGTGA TCTACCGTCT CGGTTTCGCC AACTCGCGCC AGCAGGCGCG CCAGTTGGTG
CGCCACGGCA TCTTCACGCT GAACGGCCGC AAGGCGAACA TTCCTTCGAT GCAGGTTCGC
GTTGGCGACA TCATCGAAGT GCCCGAAGCC AGCCGCAAGA TCCCCGTGAT CGCCGAGGCC
CAGGAAGTCA TCGCCCGTCG CGGCTGCCCC TCGTGGCTGG AAGTGGACGG TCCGAGCTTC
AAGGGCACGG TCAAGGCCCT GCCGCAGCGC GAAGACATTC AGTTCCCGAT CAACGAACAC
CTGATTGTCG AGCTTTACTC CAAATAA
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| Protein sequence | MAKYNDAKCR MCRREGTKLF LKGDRCYTDK CAYDRRPYAP GQHGRARKKV SDYAVQLREK
QKVRRVYGVL ERQFRGYFHK ADMAKGVTGA NLLAILERRL DNVIYRLGFA NSRQQARQLV
RHGIFTLNGR KANIPSMQVR VGDIIEVPEA SRKIPVIAEA QEVIARRGCP SWLEVDGPSF
KGTVKALPQR EDIQFPINEH LIVELYSK
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