Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_0024 |
Symbol | |
ID | 7171896 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | + |
Start bp | 29953 |
End bp | 31272 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 643538516 |
Product | histone deacetylase superfamily |
Protein accession | YP_002434454 |
Protein GI | 218885133 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 0.0263374 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGAAG CAAAGAACCG GCTGGGCATC ATCTTCTTTC CGGCCTTCGA CTGGGCCATC AGCGCCACCC ACCCGGAACG CGAGGAGCGG CTGCTCTACA CGCAGGACCA ACTGCGCGAG GAAGGGCTGT TCGACATCGC GGGCATCACC GAATACAAGC CGGAAATCGC CACCCGCGAA GACGTGGAGC GCGTGCACTT CTGCATCCCC GGCGTGGAGA GCGTGTGCAC CAAGTCGCAC CTCATTTCCG CCGGGGGGGC CATTACCGCC GCCCGGCTGG TGATGGAGAA GGAAGAGGAA AAGGCCTTCG CGCTGGTGCG CCCGCCGGGG CACCACGCCA TGAAGGTGGT GCACGGCAAC CGGGGGTTCT GCAACATCAA CATCGAAGCC GTGATGCTCG AACACATCCG CGAGCACTAC GGCCCGTTGC GCGTGGCCAT CGTGGACACC GACTGCCACC ATGGCGACGG CACGCAGGAC ATCTACTGGA ACGACCGCGA CACCCTGTTC ATCTCGTTGC ATCAGGATGG CCGCACCCTG TACCCCGGCA CCGGCTTTCC GCATGAACTG GGCGGCCCCA ACGCCATGGG TCGTACCCTG AACATCCCGC TGCCGCCCGG CACGTCGGAC AAGGGCTTCC TGCACGTCAT CGACAACCTA GTGCTGCCGG TGCTGGAAGA CTTCAAGCCG GACCTGATCA TCAACTCCGC CGGGCAGGAC AACCACTTTT CCGACCCCAT CACCAACATG AACTTCTCGG CGCGGGGCTA CGCCATGCTG AACAGGCGGC TGAACCCCGA CATAGCCGTG CTGGAAGGCG GCTACGCCAT CCAGGGCGCG CTGCCGTACG TCAACCTGGG TATCTGCCTG GCCATGGCCG GGCTGGACTT CGACGGGGTG CGCGAGCCGG AATTCGATCC GGCGGCCATT GCCCAGTCGG ACCAGGTGAC CGCGTACATC GAGCGGCTGT GCGACGAGAT GCTGAAGGTT TGGCGCAAGC CCCCGGCCCT GCCCAAGCAG GGCGAACGCT CCGGCGACTG GTGGGTGCGC ACCAAGGACA TCTACTACGA TACCGATGGC ATCAGCGAGA GCCAGGTGGA GTCGGTGCTG CTGTGCCCGG ACTGCTCGGG CACGGTGAAG ATAGAAACCT GGTCCACGGT GAATCCGCTC AGCGTGGGCA TCGAAATTCC CATCAGCGCC TGCGACAGAT GCGCGGGCAT TGGCCGCCGC CTGCTGGAGG AAGCCCACCT GAAGGGCAAC TACCGCTACG TGCAGTGCAT CGATAGAAAA GCAAAAAAAT ACACCCGCTA CGGGTTTTAG
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Protein sequence | MLEAKNRLGI IFFPAFDWAI SATHPEREER LLYTQDQLRE EGLFDIAGIT EYKPEIATRE DVERVHFCIP GVESVCTKSH LISAGGAITA ARLVMEKEEE KAFALVRPPG HHAMKVVHGN RGFCNINIEA VMLEHIREHY GPLRVAIVDT DCHHGDGTQD IYWNDRDTLF ISLHQDGRTL YPGTGFPHEL GGPNAMGRTL NIPLPPGTSD KGFLHVIDNL VLPVLEDFKP DLIINSAGQD NHFSDPITNM NFSARGYAML NRRLNPDIAV LEGGYAIQGA LPYVNLGICL AMAGLDFDGV REPEFDPAAI AQSDQVTAYI ERLCDEMLKV WRKPPALPKQ GERSGDWWVR TKDIYYDTDG ISESQVESVL LCPDCSGTVK IETWSTVNPL SVGIEIPISA CDRCAGIGRR LLEEAHLKGN YRYVQCIDRK AKKYTRYGF
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