Gene DvMF_0024 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_0024 
Symbol 
ID7171896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand
Start bp29953 
End bp31272 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content64% 
IMG OID643538516 
Producthistone deacetylase superfamily 
Protein accessionYP_002434454 
Protein GI218885133 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[B] Chromatin structure and dynamics 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value0.0263374 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGAAG CAAAGAACCG GCTGGGCATC ATCTTCTTTC CGGCCTTCGA CTGGGCCATC 
AGCGCCACCC ACCCGGAACG CGAGGAGCGG CTGCTCTACA CGCAGGACCA ACTGCGCGAG
GAAGGGCTGT TCGACATCGC GGGCATCACC GAATACAAGC CGGAAATCGC CACCCGCGAA
GACGTGGAGC GCGTGCACTT CTGCATCCCC GGCGTGGAGA GCGTGTGCAC CAAGTCGCAC
CTCATTTCCG CCGGGGGGGC CATTACCGCC GCCCGGCTGG TGATGGAGAA GGAAGAGGAA
AAGGCCTTCG CGCTGGTGCG CCCGCCGGGG CACCACGCCA TGAAGGTGGT GCACGGCAAC
CGGGGGTTCT GCAACATCAA CATCGAAGCC GTGATGCTCG AACACATCCG CGAGCACTAC
GGCCCGTTGC GCGTGGCCAT CGTGGACACC GACTGCCACC ATGGCGACGG CACGCAGGAC
ATCTACTGGA ACGACCGCGA CACCCTGTTC ATCTCGTTGC ATCAGGATGG CCGCACCCTG
TACCCCGGCA CCGGCTTTCC GCATGAACTG GGCGGCCCCA ACGCCATGGG TCGTACCCTG
AACATCCCGC TGCCGCCCGG CACGTCGGAC AAGGGCTTCC TGCACGTCAT CGACAACCTA
GTGCTGCCGG TGCTGGAAGA CTTCAAGCCG GACCTGATCA TCAACTCCGC CGGGCAGGAC
AACCACTTTT CCGACCCCAT CACCAACATG AACTTCTCGG CGCGGGGCTA CGCCATGCTG
AACAGGCGGC TGAACCCCGA CATAGCCGTG CTGGAAGGCG GCTACGCCAT CCAGGGCGCG
CTGCCGTACG TCAACCTGGG TATCTGCCTG GCCATGGCCG GGCTGGACTT CGACGGGGTG
CGCGAGCCGG AATTCGATCC GGCGGCCATT GCCCAGTCGG ACCAGGTGAC CGCGTACATC
GAGCGGCTGT GCGACGAGAT GCTGAAGGTT TGGCGCAAGC CCCCGGCCCT GCCCAAGCAG
GGCGAACGCT CCGGCGACTG GTGGGTGCGC ACCAAGGACA TCTACTACGA TACCGATGGC
ATCAGCGAGA GCCAGGTGGA GTCGGTGCTG CTGTGCCCGG ACTGCTCGGG CACGGTGAAG
ATAGAAACCT GGTCCACGGT GAATCCGCTC AGCGTGGGCA TCGAAATTCC CATCAGCGCC
TGCGACAGAT GCGCGGGCAT TGGCCGCCGC CTGCTGGAGG AAGCCCACCT GAAGGGCAAC
TACCGCTACG TGCAGTGCAT CGATAGAAAA GCAAAAAAAT ACACCCGCTA CGGGTTTTAG
 
Protein sequence
MLEAKNRLGI IFFPAFDWAI SATHPEREER LLYTQDQLRE EGLFDIAGIT EYKPEIATRE 
DVERVHFCIP GVESVCTKSH LISAGGAITA ARLVMEKEEE KAFALVRPPG HHAMKVVHGN
RGFCNINIEA VMLEHIREHY GPLRVAIVDT DCHHGDGTQD IYWNDRDTLF ISLHQDGRTL
YPGTGFPHEL GGPNAMGRTL NIPLPPGTSD KGFLHVIDNL VLPVLEDFKP DLIINSAGQD
NHFSDPITNM NFSARGYAML NRRLNPDIAV LEGGYAIQGA LPYVNLGICL AMAGLDFDGV
REPEFDPAAI AQSDQVTAYI ERLCDEMLKV WRKPPALPKQ GERSGDWWVR TKDIYYDTDG
ISESQVESVL LCPDCSGTVK IETWSTVNPL SVGIEIPISA CDRCAGIGRR LLEEAHLKGN
YRYVQCIDRK AKKYTRYGF