Gene PCC8801_2539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPCC8801_2539 
Symbol 
ID7101717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 8801 
KingdomBacteria 
Replicon accessionNC_011726 
Strand- 
Start bp2630045 
End bp2631031 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content45% 
IMG OID643475581 
ProductRNA polymerase sigma factor 
Protein accessionYP_002372703 
Protein GI218247332 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCACTG CTAACGTCAA CTCAAAAACG AAACAACCTA TGTATTCAGC AGATATGGTG 
CGGACTTATC TGCATGAAAT TGGGCGAGTA CCCTTGTTAA CCCATGAACA GGAAATCGTT 
TATGGGAAGC AAGTACAAAG AATGATGTCC CTGTTCGAGA TGAAAGACCA ACTCACTCAA 
GCGCAAGGCA CTGAACCGAG TGACAAGGAG TGGGCTAAAG CGGTTAATTT GAAGGAACCT 
GAACTCAAAA AAACCATCGA ACAGGGAAAC CGGGCTAAGC GTAAGATGAT TGAAGCGAAC 
TTACGTTTAG TGGTTGCCAT TGCTAAGAAA TACCAGAAGC GCAACATGGA ATTTCTCGAC 
CTAATTCAAG AAGGAAGCCT AGGATTAGAA CGGGGAGTGG AGAAATTTGA CCCAACCAAA 
GGCTATAAAT TCTCAACCTA CGCTTATTGG TGGATTCGCC AAGCGATTAC CCGGGCGATC 
GCACAACAGG CTCGTACCAT TCGTTTGCCC ATTCATATCA CTGAAAAACT CAATAAAATT 
AAGAAAACCC AACGAGAACT TTCGCAAAAA CTAGGACGCA GTGCTACTCC GGCTGAAATT 
GCGGCGGTAC TTGAAATTGA GCCGTCTCAA ATTCGGGAAT GTTTAAGCAT GGCACGTCAA 
CCCATTTCCC TAGATGTGCG GGTGGGAGAT AATCAAGATA CGGAACTCTC GGAATTATTA 
GAAGATCACG AGGCTTCCCC TGATCAATAT ATTACCCAAG AGTTACTCCG CCAAGACCTC 
AAGAACTTGA TGGAGGAATT AACCCCCCAA CAGCGATCAG TTCTCATTCT TCGCTTTGGG 
TTAGAAGATG GGAAGGAACT CTCTTTGGCT AAAATTGGTA AAAAACTCAA TATTAGCCGA 
GAACGGGTTC GTCAGTTGGA ACATCAAGCT CTTGCTCAAC TTCGCAGACG TAGAGCTAAT 
GTTAAGGAGT ATCTCGCAGC GAGTTAA
 
Protein sequence
MPTANVNSKT KQPMYSADMV RTYLHEIGRV PLLTHEQEIV YGKQVQRMMS LFEMKDQLTQ 
AQGTEPSDKE WAKAVNLKEP ELKKTIEQGN RAKRKMIEAN LRLVVAIAKK YQKRNMEFLD 
LIQEGSLGLE RGVEKFDPTK GYKFSTYAYW WIRQAITRAI AQQARTIRLP IHITEKLNKI 
KKTQRELSQK LGRSATPAEI AAVLEIEPSQ IRECLSMARQ PISLDVRVGD NQDTELSELL 
EDHEASPDQY ITQELLRQDL KNLMEELTPQ QRSVLILRFG LEDGKELSLA KIGKKLNISR 
ERVRQLEHQA LAQLRRRRAN VKEYLAAS