| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_2382 |
|---|
| Symbol | |
|---|
| ID | 7093934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | + |
|---|
| Start bp | 2595276 |
|---|
| End bp | 2597612 |
|---|
| Gene Length | 2337 bp |
|---|
| Protein Length | 778 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643465704 |
|---|
| Product | peptidase C14 caspase catalytic subunit p20 |
|---|
| Protein accession | YP_002362674 |
|---|
| Protein GI | 217978527 |
|---|
| COG category | [N] Cell motility
[R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG4249] Uncharacterized protein containing caspase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTATCG GCCGCATTCT CGTGTTCGTG TGCAGCGTGC TGCTCGCCGC CCCCTTTGCG
CTTGGCTCGC GCGCCCTCGC CGCTGACGGC GACCTCGAGC TTTGCAATCA TTCGCTTAGC
AATCCCGACG CCGGCATTCC CGCCTGCACA AGATTGATCG AGAGCTCTGC CGACGAAGCG
GCGACGCCCG GCCTTCTCAA CAATCGCGGC GTCGCCAAGG TGCGCAAGGG CGACCTTGAA
GGCGCGATTG CGGATTTTTC CCGCGCGCTC GACCGCAATC CCAACTCGAT CGACGCCTAT
CGCAATCGCG GCCTCGCGCG CCAGATCGAG GGCGATTACG ACGGCTCGAT CGCCGACTAT
AATCAGGCCA TCCGGATCGA CGCAAAATCG CCGGACCTCT ACAATTCGCG CGGCGCTGCG
CTCGTCAACA AGGGCGAATA TGACCGGGCG ATCGCCGACT ATGACAAGGC GATCCGGCTC
AACGGCAAAT TCGCCAAGGC GTTCTACAAT CGCGGCCAGG CCCGCTACCT GAAGAATCAG
CCCGATCGCG CCATCGCCGA TTTCGACGAA TTCATCAAGC TGTCGCCCAA TGAGGCCAAG
GGCTATGTGC AGCGCGCCGA TGCGCGGCTC GCCAAGGCCG ACGTCCTCGG CGCGATCGCC
GATTATGATT CGGCGATCAA GGTCGACGGC GGCAATGGCG AAGCCTTCAG CCATCGCGGC
GAAGCGCGCC GCCTGCAGGG CGATCTCGAA AAATCGCTGC TCGACCAGAA CAAGGCGATC
GAGCTGGCCG CGACGCCGGA AAGCTATGTC AATCGCGCCC TTGTCTATGC CGATCAGGGC
AAGCTCGATC TCGCCATCGC CGATTGCGAC GAGGCGCTTT TGCTCCGGCC GAAATATGAT
CTCGCCTTCG CGCAGCGCGG CCGGGTGAAG CGGCTCAGCG GCGACCTTGA AGGCGCGCTC
GGCGATCTCA ACAAGGCTCT TTCGATCGAT CCGCGCTTGC CCGTGTCGCT CAGCTTCCGC
GGCGACGTCT TTCTCGCGCG CGACTCGAGC GATCGCGCCA TCGCCGATTT TACCGAGGCG
CTTCGCGTCG CGCCCGATTT CGTCGCCGCC TACGCCGGCC GCGGCCAGGC CTACGAGAAA
GCCGGCCAAT TGCCGAAAGC GAAGGCCGAT TACCAGAAGG CGCTGAGCCT GCCCGGCGAA
GCCGACGCCG CCCTCGCCAA GCCGGCGCAG AATCAGGCCC GCGCGCGCCT CGCCGCGCTC
GCGGCGAGCG AAGCCTCCAG CGCCAAGATC GTCGCCGGCG TAGCCGTGGC CGACGCGACC
GATGCGCGGG CGAAAGCCGA CGCCGAGGCG CGCGCCAAGG CCGAGGCCGA GCAGCAGGCG
GCCGCCATTG AGGCCCGAAT CAAGACCGAG GTGGAAGCCC GCACGAAGGT CGCCGCCGAG
GCGGCCCGGG CGCGGCTCGA AACGCAGGCC GCCGCCGAAG CCCGCGCGCG CGCCGACGCC
GACGCCAAGG CGAAAGCCGC CTATGAGGCG CAGGCGAAAG CCGAATTTGA CACGCGGCTA
AAAGCCGAGG TCGAGGCGCG CGCCAAGGCC GTCGTCGAGG CGGCGCAAGC CAAAAGCGCC
GCGCTCGCGC CGCCGATCGG CAATCGCGTC GCGCTCGTCA TCGGCAATTC CAGCTATCGC
GAGGTCGCGA CGCTGCCCAA TCCGCAGCGC GACGCCCAGG CGGTCGCGGC GGCCTTCCGC
AAGGTTGGCT TCCAGACCGT CTTCGCCGAG CAGGATCTGA CGCGCGAAAA ATTCCTGGCC
GCGCTACGCG CCTTCGAAGA CAAGGTCGAA ACCGCCGATT GGGCCGTGGT CTATTACGCC
GGCCATGGGT TGGAGATCGG CGGCGTCAAT TATCTCATTC CCGTCGACGC AAAGCTCCGG
GCCGACCGCG ACGTGCAGGA CGAAGCGATC ACCCTCGAGC GCGTCCTGAT CGCGACGGAG
CGCGCCAAGA AGCTGCGGCT CGTCATTCTC GACGCCTGCC GCGACAATCC GTTCGCGGCG
CGCATGCAGC GGACCATGGC CTCCCGCTCC ATCGGCCGCG GCTTCGCCCG CGTCGAGCCG
GAGGGCGGCA CCCTCGTCGC CTATGCGGCG CGCGATGGGC AGGTCGCGCA GGACGGCGAC
GGCGATCACA GCCCCTTCAC CCAGGCTTTC CTGCGCAATA TCGTCAAGCC TCAGCTTGAG
ATCAATATGC TGTTCCGGCA GATCCGCGAC GAGGTGCGGC AGGCGACCAA CCAGCGGCAG
GAGCCTTTCA CCTATGGCTC GCTGCCGGGC GAGAGCTTTT ATTTCGTCGC CAAATAG
|
|---|
| Protein sequence | MIIGRILVFV CSVLLAAPFA LGSRALAADG DLELCNHSLS NPDAGIPACT RLIESSADEA
ATPGLLNNRG VAKVRKGDLE GAIADFSRAL DRNPNSIDAY RNRGLARQIE GDYDGSIADY
NQAIRIDAKS PDLYNSRGAA LVNKGEYDRA IADYDKAIRL NGKFAKAFYN RGQARYLKNQ
PDRAIADFDE FIKLSPNEAK GYVQRADARL AKADVLGAIA DYDSAIKVDG GNGEAFSHRG
EARRLQGDLE KSLLDQNKAI ELAATPESYV NRALVYADQG KLDLAIADCD EALLLRPKYD
LAFAQRGRVK RLSGDLEGAL GDLNKALSID PRLPVSLSFR GDVFLARDSS DRAIADFTEA
LRVAPDFVAA YAGRGQAYEK AGQLPKAKAD YQKALSLPGE ADAALAKPAQ NQARARLAAL
AASEASSAKI VAGVAVADAT DARAKADAEA RAKAEAEQQA AAIEARIKTE VEARTKVAAE
AARARLETQA AAEARARADA DAKAKAAYEA QAKAEFDTRL KAEVEARAKA VVEAAQAKSA
ALAPPIGNRV ALVIGNSSYR EVATLPNPQR DAQAVAAAFR KVGFQTVFAE QDLTREKFLA
ALRAFEDKVE TADWAVVYYA GHGLEIGGVN YLIPVDAKLR ADRDVQDEAI TLERVLIATE
RAKKLRLVIL DACRDNPFAA RMQRTMASRS IGRGFARVEP EGGTLVAYAA RDGQVAQDGD
GDHSPFTQAF LRNIVKPQLE INMLFRQIRD EVRQATNQRQ EPFTYGSLPG ESFYFVAK
|
|---|
| |