| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_1736 |
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| Symbol | ligD |
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| ID | 7090848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | - |
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| Start bp | 1886469 |
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| End bp | 1889135 |
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| Gene Length | 2667 bp |
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| Protein Length | 888 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643465059 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_002362044 |
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| Protein GI | 217977897 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.946456 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGGACA CCAAGCTCAA AACCTATCGC GCCAAGCGCG ACTTTGCTCA AACGGCGGAA
CCGAGCGGAG AGGCTCCGAT CGCGGCCGGA CCGCGTCGGC GCTTCGTCAT CCAGAAACAT
GCCGCAACCC GGCTCCATTA CGATCTTCGA CTGGAGCTCG ACGGAGTCTT CAAATCATGG
GCTGTCACCA AGGGCCCCTC GCTCGATCCG CATGACAAGC GCCTTGCAGT TGAGGTCGAG
GATCATCCGC TCGACTATGG CGATTTCGAA GGCGTGATCC CCAAAGGCCA ATATGGGGGC
GGCACGGTCC AGCTGTGGGA TCGCGGGTTC TGGGCGCCGG AGGGCGACAA GACGCCTGAA
CAGGCGCTGG CCGACGGCGA TCTCAAATTC ACGCTCGACG GCCAAAGGCT GTATGGCAGT
TGGGTGCTCG TGCGCATGAA GGCCGACCGC ACGGGCGGCA AACGAACCAA TTGGCTGCTC
ATCAAACATC GCGACGGCTA CGCGCGGGAT GGCGACGCCG ACGCTCTGCT GGCGGAGGAC
CGCTCCGTCG CTTCGGGCCG CGCGATGGCG GCGATCGCGG CCGGCAAGGG CAAGGGGCCA
AAGCCTTTCA TGCTCGCGGG CGAGCAAGCC GCCGATCCGA AAGCGGTGTG GGACTCGAAC
AAGGGGCTCG CCGCCGAGGC GCGCGCGGCG CCCAAGGCCA CGCGGAAAAA ATCTGGCGCG
GCTTTGGCGC AAATGCCGGA TTTCCTGCCG CCGCAGCTTT GCCAGCCGGT CGAGCGGCCG
CCTTCGGGCG ACGGTTGGGT TCATGAAATC AAATTCGACG GCTATCGCAT GCAGCTTCGC
GTCGCCGGCG GCAAAGCGAC GCTGAAAACG CGCAAGGGGC TGGACTGGAC CGATAAATTC
GCGGCGATCG CTGCGGAGGC GGCGGATTTC CCCGACGCTA TCATCGATGG CGAGATCGTC
GCGCTGGATA GCTCGGGCTC GCCCGATTTC GTGGCGCTGC AGGCGGCGCT TTCAGAACAG
AATACCGATG ATCTGATTTT CTACGCCTTC GACCTGATGT TCGAGGGCGG GAGAGATTTG
CGGCTCGAGC CGCTCGCCGC GCGCAAGCAG GCGTTGGCGC GTCTCATAGC CGGCGCGCGG
CTTGGCGCGG GCGCGCTGAT CCGTTTCGTC GAGCACTTCG AGACCGGCGG CGACGCGATT
TTGCAATCCG CCTGCCGCCT CAATCTGGAA GGCATCGTTT CAAAGAAACG CGACGCGCCC
TACCAGCCCG GCCGCTCCGA CAGCTGGACC AGGGCGAAGT GCCGCGCCGG CCACGAGGTG
GTGATCGGCG GATGGACGAC CACGGAGGGG AAATTCCGCT CCCTGTTGGC GGGCGTCCAT
CACGGCGAGA ATTTCACCTA TATCGGCCGC ATCGGAACGG GGTTCGGCGA AGCCAAGGTC
AAAACCCTGC TGCCGAAGCT GAAGCAGTTC GCGGCGGAGA CATCGCCCTT CACCGGGCCG
AGCGCGCCAC GCAAAACCGC TTCGATCCAT TGGCTGAAGC CGGAGCTCGT CGCCGAGATT
GAGTTTGCGG GGTTTACAGG CGCCGGCATG GTGCGGCAGG CGGCCTTCAA AGGGCTGCGC
GAAGACAAGC CGGCCGAAGA GGTCGAAGCC GAGACGCCGG CCCCGCCGGA GCAAGCTGCT
GTTCCCGATC CCGCAGAGAT TCAGGCGAGC GCGCGTTCAT CCTCGGATAA GCCCATGGCG
ACGGCCAACG GCAAACCCAT CGTCATGGGC GTCGCCATCT CCAACCCGGC GAAGGAGTTG
TGGCCGGCTG ACGGCGCCGA AGCTCCGGTC TCGAAACTCG ATCTGGCGCG CTATTACGAA
GCGGCCGGTC CCTGGCTCAT AGAGCATGTG CGCGGCAGGC CTTGCTCGCT CATCCGCGCG
CCCGACGGGA TCACTGGCCA GCAATTCTTT CAGCGCCACG CCATGGCCGG AGCCTCGAAC
CTGCTCGATC TTGTGACCGT GTCGGGCGAT CGCGCGCCCT ATCTGCAGAT CGACCGTGTT
GAGGGATTGG CGGCGGTGGC GCAAATCGCT GGGCTTGAGC TGCATCCGTG GAACTGCGCG
CCGGGGCGCC CGGAGACGCC CGGGCGGCTG ATATTCGATC TCGACCCCGG CCCCGACGTC
GCCTTCGAGC AGGTGGCAGC CGCCGCTCTT GAGATGCGCG ACAGGCTCGA CGCGCTGGGG
CTCGTCAGTT TCTGCAAGAC GACGGGCGGC AAGGGGCTGC ATGTCGTCAC GCCGCTGGCG
GTCGCCAAGG GCTCCAAACT CACCTGGCCC GAGGCGAAGG GGTTCGCTCA GGAGGTCTGC
CGGCGCATGG CCGCGGACAA TTCGAACGCC TATCTCCTCA ACATGTCCAA AAAGCTTCGC
GCGGGGCGTA TTTTCCTCGA CTACCTGCGC AATGACCGCA TGTCGACGGC CGTCGCGCCG
CTGTCGCCAC GCGCGCGTCC GGGCGCCACG GTTTCGATGC CGCTGAACTG GAGCGAGGCG
ACCAACAGCC TCGATCCGAA AGCCTTTACG ATCCGCACGT CCGTTGGGCT TCTCGACAAG
AGCAAAGCCT GGGCCGACTA TGATTCGGGC GCGCGTCCGC TGGAGGCGGC GATCAAACGC
CTCGGCCGCG CCAAGGCGGC CGCGTGA
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| Protein sequence | MADTKLKTYR AKRDFAQTAE PSGEAPIAAG PRRRFVIQKH AATRLHYDLR LELDGVFKSW
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GVIPKGQYGG GTVQLWDRGF WAPEGDKTPE
QALADGDLKF TLDGQRLYGS WVLVRMKADR TGGKRTNWLL IKHRDGYARD GDADALLAED
RSVASGRAMA AIAAGKGKGP KPFMLAGEQA ADPKAVWDSN KGLAAEARAA PKATRKKSGA
ALAQMPDFLP PQLCQPVERP PSGDGWVHEI KFDGYRMQLR VAGGKATLKT RKGLDWTDKF
AAIAAEAADF PDAIIDGEIV ALDSSGSPDF VALQAALSEQ NTDDLIFYAF DLMFEGGRDL
RLEPLAARKQ ALARLIAGAR LGAGALIRFV EHFETGGDAI LQSACRLNLE GIVSKKRDAP
YQPGRSDSWT RAKCRAGHEV VIGGWTTTEG KFRSLLAGVH HGENFTYIGR IGTGFGEAKV
KTLLPKLKQF AAETSPFTGP SAPRKTASIH WLKPELVAEI EFAGFTGAGM VRQAAFKGLR
EDKPAEEVEA ETPAPPEQAA VPDPAEIQAS ARSSSDKPMA TANGKPIVMG VAISNPAKEL
WPADGAEAPV SKLDLARYYE AAGPWLIEHV RGRPCSLIRA PDGITGQQFF QRHAMAGASN
LLDLVTVSGD RAPYLQIDRV EGLAAVAQIA GLELHPWNCA PGRPETPGRL IFDLDPGPDV
AFEQVAAAAL EMRDRLDALG LVSFCKTTGG KGLHVVTPLA VAKGSKLTWP EAKGFAQEVC
RRMAADNSNA YLLNMSKKLR AGRIFLDYLR NDRMSTAVAP LSPRARPGAT VSMPLNWSEA
TNSLDPKAFT IRTSVGLLDK SKAWADYDSG ARPLEAAIKR LGRAKAAA
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