| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1916 |
|---|
| Symbol | |
|---|
| ID | 7085685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 2161297 |
|---|
| End bp | 2162451 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 643698941 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002355563 |
|---|
| Protein GI | 217970329 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGC CCAGGATGAA GGCGCGTACG CTCGCGCTGG TCGCGGTGAT CGTTCCGCTG
CTGGCCGTGT TCGCCAACGT GGCAATGCGC TCGGGTCCGC TCGCCCCGCT CAAGGTGACG
GTGGCGCGGG TGGAGGAGGG CGTGGTGTCG CCGGCGCTGT TCGGCATCGG CACGGTGGAG
GCACGCCACG TCTACCGGAT CGGCCCGACG GCGGCTGGGC GGGTCAAGCG CGTCGACGTC
CAGGTGGGCG AGCGTGTGCG CGTCGGGCAG GTGCTCGGCG AGATGGACGC GGTGGATCTC
GGCGACCGCA TCCGCGCCCA GGAGGCTGCG CTCGAGCGCG CGCAGGCGGC GATGCGCGAG
GCCGAGGCGC GCCAGGGCTT CGCGCGCACG CAGGCGCGGC GCTACGACAA GCTGGGCAGC
CTGCAGGCCG CGAGCGAGGA GCTTGCGCTC ACCCGCCGCC AGGAGCTCGA GGTCGCCGAG
GCCGGCCTCG CCGCCGCGCG CGAGGAGCGC ACGCGCGCCC GCGCGGAAGG CGCCGCGCTG
CAGGCTCAGC TCGCCAACCT GCGCCTGGTC GCGCCGGTCG ATGGTGTGGT CACGCTGCGC
GAGGTGGAGC CGGGCACCAC GGTCGTGGCG GGCCAGGCGG TGCTCGAAGT GATCGACCCG
GCGACCCTGT GGGTCGACCT GCGCCTCGAC CAGGTCAATG CCGGAGGCCT GGCCGCCGGC
TTGCCGGCCC GCGTCGTGCT GCGCTCGCGC AGCGGCGAGG CGCTCGCCGG GCGGGTGCTG
CGCGTGGAGC CGAAGGCCGA CGCGGTGACC GAGGAGCTGC TCGCCAAGGT GGTCTTCGAC
CGGCTCCCCG AGCCGATGCC GCCGCTCGGC GAGCTGGCCG AGGTCACCCT GGCGCTGCCG
CCGCTGCACG CCGCGGCGGT GATCCCCAAC GCCGCGCTGC GGCGCGAGGC GGGTGCGGTC
GGGGTGTGGC GGCGCGCGGG GGAGGGCGGT CTGCGCTTCG TGCCCTTAAA GCTGGGCGCG
AGCGACCTCG ACGGGCGCGT GCAGGTGCGC GAGGGCCTGG CGGCGGGCGA CGAGATCGTC
GTGTATAGCG AGGCCGGGCT GCGCGCAGGC CGCCGCACCG AGGTCGTCGC GGCACTGGAC
GGAGCGGGCA AATGA
|
|---|
| Protein sequence | MSLPRMKART LALVAVIVPL LAVFANVAMR SGPLAPLKVT VARVEEGVVS PALFGIGTVE
ARHVYRIGPT AAGRVKRVDV QVGERVRVGQ VLGEMDAVDL GDRIRAQEAA LERAQAAMRE
AEARQGFART QARRYDKLGS LQAASEELAL TRRQELEVAE AGLAAAREER TRARAEGAAL
QAQLANLRLV APVDGVVTLR EVEPGTTVVA GQAVLEVIDP ATLWVDLRLD QVNAGGLAAG
LPARVVLRSR SGEALAGRVL RVEPKADAVT EELLAKVVFD RLPEPMPPLG ELAEVTLALP
PLHAAAVIPN AALRREAGAV GVWRRAGEGG LRFVPLKLGA SDLDGRVQVR EGLAAGDEIV
VYSEAGLRAG RRTEVVAALD GAGK
|
|---|
| |