Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_2108 |
Symbol | |
ID | 6878099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 2102733 |
End bp | 2104811 |
Gene Length | 2079 bp |
Protein Length | 692 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642789971 |
Product | Glucan 1,4-alpha-glucosidase |
Protein accession | YP_002220523 |
Protein GI | 198284202 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | [TIGR01535] glucan 1,4-alpha-glucosidase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.860324 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCGGCATG AACGTCGCAA GACCAAGGAG ACCATGAGCG AACTTCCGTT CGGGCAGCCA GGCCTGCCCA GCACTTGGGC CAGTGCCCAC AAGCAGGCTG TGGGCACTGC CTTGAGTGAA CGTTCCCGCG TCTGGTTCAC CGTCGCCGAC GGTGTGTTAA CCGAGGTTTA TCATCCGACG ATCGACTGTC CGAATCAACG CGATCTTCAG TTCCTGATCA CCGATGGTGG TGAGCTATTT CACGAAGAGC GACGCGATCT GGAACATAGC GTCGAGTGGA TCGAAGACGG CATTCCGGCC TTCCAGATTG TCAGCCGAGA TCCGCAAGGC CGCTACCGAC TGATCAAGAC GGTCTGCACG GATCCCGATG CCGACTGCGT GCTTGAGCGA GTCCACTTCG AGCCTTTGGT GGAAGCAGCC CGACATTACC GCCTGTATCT GCTGTGGGCG CCCCATCTCG ACAACCAGGG GTCGGATAAC CACGGTCGCG TTGAATATGG CGCCAACGAA TGCGACTGGC TCATCGCCTG GCGCGGGTCT CGATACGCTG CGGTAACCGC CACGGTACCC TTCTCACGCA TGTCAGCCGG CTATGTGGGT CATTCCGACG GCTGGCAGGA TATAAACAGA CACCGGCACC TAGAATGGAA CTTCACGACA GCGGGACCGG GCAATATTGC GCTGACGGCA GAACTGGAGT TGCCGCCAGA CGGTCATTTC ATGCTTTGTG TCGGGTTCGG CAACAGCGAG CGGACGGCCA TCAAGGCTGC AAGCGGCTGC CTGGACCGCA ACGGATTCGC GTCGGTTCTC AATCGCTACA TGGAAGGGTG GCGCGCTTAT CAGCGCGGAT TGCTCGATCT GTCGGCCCAG AGCGGCGACG GCGGGCAGCT TTACCGGCGT AGCATCGCGG TGTTGCGTAC GCATATCGAC AAGATTCATC GCGGCGCGGG CGTGGCCTCG TTGTCCATTC CCTGGGGCGA ATCGGCATCG GCGGACCAGC CGATTGGCGG CTATCACTTG GTCTGGCCGC GCGATCTCTA CCACCAGGCC ATGGGCTTGC TCGCCGCCGG CGACCGGGAG AGGCCAGCGC AGATTCTGCA TTATTTGTTC TCTCGACAGC GCGAGGATGG AAGCTTCTTT CAGAATTTCT GGGTGGATGG CAGGCCCTAC TGGCAAGGCC TGCAGCTCGA CGAAGTCGGC TATTCGGTGC TGTTGGCCAA CCACCTGCAC CACGAAGGGC TCTTGGACTT CGACCCGTAT CCCGTGGTAC AGCGTGCCGC CGATTTCCTG GTGAACCATG GGCCGGTCAC CCCCCAGGAC CGCTGGGAGG AGAACAGAGG TTACAGTCCC CATACCCTGG CGGTAGTGGT TGCCGCGCTG CGCGCTGCGG CAGCGGTGGC CGATGCGACC GGAAAAGGGG CGCAGGCCGT CACTTACCGA CAGGTGGCGC AAGACTGGGA ACAACGCATC GAGGATTGGA CCTTCACCGA TTGCGGTCGA TTGCTCTTCG GCCATCCCGA GCACTACGAG CGTATCGCCC TGATCCCGTC GGTCGACACC GGTGAGCATC TGCCAGAGTG TCGAGTATTT CTGCCAATTC GCAATCTACC AGCGGAAGCA ATGTACAACC AGTCCCAATG TTGCGTGGTA GACGGCGGTT TCCTGGAGTT GGTACGCCTG GGTCTGCGCA CCGCCGCCGA CCTGCACGTT CTCAAGACCC TGCCGGTATG GGATGCACTG TGCCGACGCG AGACGCCTTG CGGACCGGCG TGGTATCGCT ACAACGGGGA TGGTTACGGT GAGCACGAGG ACGGTTCACC ATTCGATGGT ACCGGGCGCG GACGCTTGTG GCCGTTGCTC ACCGGCGAGC GCGGACACTA TGAAGTTGCC GCCGGACGCG ACTCCCGGCC CTACATCAAG GCGCTGGAGT GCTTTGCCAA CGAAAACGGC ATGCTGCCCG AGCAAGTGTG GGATACAGAA CCGCGTCTGG GCCATGGCAC GGGTTCGGCC ACACCTCTGG TGTGGGCTCA CGCGGAGTAT ATCCGGCTGC TGGGCGCTTC GAGTCGTAAA GGAACATGA
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Protein sequence | MRHERRKTKE TMSELPFGQP GLPSTWASAH KQAVGTALSE RSRVWFTVAD GVLTEVYHPT IDCPNQRDLQ FLITDGGELF HEERRDLEHS VEWIEDGIPA FQIVSRDPQG RYRLIKTVCT DPDADCVLER VHFEPLVEAA RHYRLYLLWA PHLDNQGSDN HGRVEYGANE CDWLIAWRGS RYAAVTATVP FSRMSAGYVG HSDGWQDINR HRHLEWNFTT AGPGNIALTA ELELPPDGHF MLCVGFGNSE RTAIKAASGC LDRNGFASVL NRYMEGWRAY QRGLLDLSAQ SGDGGQLYRR SIAVLRTHID KIHRGAGVAS LSIPWGESAS ADQPIGGYHL VWPRDLYHQA MGLLAAGDRE RPAQILHYLF SRQREDGSFF QNFWVDGRPY WQGLQLDEVG YSVLLANHLH HEGLLDFDPY PVVQRAADFL VNHGPVTPQD RWEENRGYSP HTLAVVVAAL RAAAAVADAT GKGAQAVTYR QVAQDWEQRI EDWTFTDCGR LLFGHPEHYE RIALIPSVDT GEHLPECRVF LPIRNLPAEA MYNQSQCCVV DGGFLELVRL GLRTAADLHV LKTLPVWDAL CRRETPCGPA WYRYNGDGYG EHEDGSPFDG TGRGRLWPLL TGERGHYEVA AGRDSRPYIK ALECFANENG MLPEQVWDTE PRLGHGTGSA TPLVWAHAEY IRLLGASSRK GT
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