Gene SeD_A0033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0033 
Symbol 
ID6874245 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp34377 
End bp34817 
Gene Length441 bp 
Protein Length146 aa 
Translation table11 
GC content37% 
IMG OID642783291 
Productputative transcriptional regulator 
Protein accessionYP_002213985 
Protein GI198244219 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.191558 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value0.0305605 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTATTT ATTTAATTAA CAGCACGCAC ACTTACAATG ATAAGACCAA TGAGCTAAAA 
AACATAAAAA CGGGAAAGAT GATAAAAATT GCCGCAATGC GCATAAAGTG TCTGGAATAT 
ATGCTGAATC ATGCACAACA AGAGATTATT TATAAAAAAC AACTCACTAA TGAACTTTGG 
GGGGAAAGAA GTCAATTTAT CAGCGACGCC AACCTGACCC AGATTTTATA TCTACTGCGG 
CGCGACCTTA AAGGCTTTGG CCTGAGCCAG TTTTTTTCCA CGGTGCCTCG AACGGGTATT 
AAAGTAGATG CTAACATTAT TATCAGCAAT GAAAACAAAA GCTGCCTCCC CTCTTCTTTA 
AAAAAAGAAG CGTATAAATA TATGGCATTA TTTTTCGCTT TACTGACCAT GGTCATAACG 
GTTATTCATT TAATACGATA A
 
Protein sequence
MTIYLINSTH TYNDKTNELK NIKTGKMIKI AAMRIKCLEY MLNHAQQEII YKKQLTNELW 
GERSQFISDA NLTQILYLLR RDLKGFGLSQ FFSTVPRTGI KVDANIIISN ENKSCLPSSL 
KKEAYKYMAL FFALLTMVIT VIHLIR