| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3878 |
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| Symbol | |
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| ID | 6780742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 4416319 |
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| End bp | 4418340 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642769873 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_002140666 |
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| Protein GI | 197120239 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAG CCTCTGACCC GCCCCAACCC GACCCCCAGG ACGCCCTGGC TGCGCTGCAG
CAAAAGCTCG CAGGTCTTGG GGAATCCTCG ATGCGCAAGA GCTACTACCC CGAGCTGCAG
GAGCGCCTTG AGGAACTGGA ACGCTTCAAG GCCTTGCTGG ATCACAGCAA CGAATCCATC
TTCCTGATCG AGGTCTCCAC CGGGCGCATC GTCGACCTGA ACGACGCGGC CAGCCGCCAG
ACCGGCTGGA GCCGCGACGA GCTCCTGCAG CAATCCCTAT TCGATCTCTC CAACCTGCAG
CAAAGCCCCG CCGCGGAAGC GCTCGTCCGC TCCCCCGAGG AGACGGGAAG CGTCCGTATG
CTCGCCGTCA CCGAACTCCA CCGCAAGGAC GGCGGGCGTT TTCCCGCCGA GATCACCCTG
AACCGGATGC AGTTCCGCGA GAATTCCTAC GTGCTGGCGG TCGCCCGCGA CATCACCCAA
AGGAAGGCGA TGGAGGAGGC GCTTAGGGAG AGCGAGGAAT TCCTGAAGAA CATCGTGGAC
CACATCCCTG CGGTGGTTTT CGCCAAGGAG GTGCAGGGGC TGCGCTTCGT CACCATCAAC
AAGGCGTGCC AGGAGGTGTT CGGCTTGAGC CGGGCGGAGG TGCTCGGCCG CACCAACTAC
GACCTCTTTC CAAAGGAGCA GGCCGAGTTC TTCACCAAGA TGGATCGGGA GACCCTCGCC
AAGGGCGAGC TGGTGGAAGT CCCGGAGGAG ACCATCACCA CCGCAAACGG CGACCGCATC
CTGCGGGTGA AGAAGATCCC TCTTTTCGAC AACCAGGGGA AGGAGCGTTT CCTGCTGGGG
ATCGCCGAGG ACATCACGGA AAGGAAGCAA CTGGAAGAAA AGCTGCTGCA ATCGCAGAAG
ATGGAGGCGA TCGGTCAGCT GGCCGGCGGG GTGGCGCACG ACTTCAACAA CATCCTGATG
GTGATACTCG GCTACGGGAG CATCCTGCTC AACGAAGGGG CGCTGCCGGC GCGGCAAAAG
GAGCAGGTGG AGCAGATCAT GAACGCGGCG GACAAGGCGG CGAAACTCAC CTCCGACCTC
CTCGCCTTCA GCCGAAAGCA GGTGATCAAG CCCGCCACCA TGAACCTGAA CGACATCATC
CTGCACGTGG AAAAGTTCCT CTCCCGCATC ATCGGCGAGG ACGTCCAGCT GAAGGCGCGG
CTCGCTCCGC GCGAACTGCA GGTCGACGTC GACCGGGGGC AAATTGAGCA GGTGCTGATC
AACCTCGCCA CCAACGCCCG CGACGCCATG CCCAAAGGGG GGCTGCTCAC CATCGAGACC
TCGTCGCTGC AGATCGACGA AGCCTTCGTC CAGGCCAACG GCATCGGCGC CCCAGGCCCT
TACGCCGTCA TCTCCATCTC CGACACCGGC GTCGGCATGG ACGAACAGAC CCGCAGGAGG
ATCTTCGAGC CCTTCTTCAC CACCAAGATA GTGGGGAAGG GAACAGGCCT CGGCATGTCC
ATCGTCTACG GCATCATCCA GCAGCACAAC GGCTTCGTGA ACGTCTACAG CGAGCCGCAG
CTAGGGACCA CTTTCCGCAT CTACCTCCCC TTCAGCGAAA AAAGCGCCGA CAGGGCTCTG
GAACCCCAAG CCCCCGACAC ACCTCCGGGC GGGGTGGAGA CCATACTCGT GGTGGAGGAC
GAGCCGGATC TGCGCCTGCT CTTGCAGAAC ATCCTTTCCG GCGCCGGGTA CCGTGTCCTC
CTGGCCGAGA ACGGGCAGGT TGCAGTCGAG CAGTACGCAG CCGGGGCAAG GGGGGAGATA
GCGCTGGTGC TGATGGACAT GATCATGCCG GGGATGAGCG GCAAGGAAGC CTGCCACGCC
ATCCGCGCCA TCGAACCCGC GGCCAAGGTG CTTTACACCA GCGGCTACAC CATGGACATC
ATCAAGAGCC GCGACCTGTT GGAGGAAGGG ACTGAACTCC TCATGAAGCC GGTCCGCCCC
CTGGAGCTTT TGAAGAAGGT GCGGGAGATG CTGGACAGGT AG
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| Protein sequence | MKKASDPPQP DPQDALAALQ QKLAGLGESS MRKSYYPELQ ERLEELERFK ALLDHSNESI
FLIEVSTGRI VDLNDAASRQ TGWSRDELLQ QSLFDLSNLQ QSPAAEALVR SPEETGSVRM
LAVTELHRKD GGRFPAEITL NRMQFRENSY VLAVARDITQ RKAMEEALRE SEEFLKNIVD
HIPAVVFAKE VQGLRFVTIN KACQEVFGLS RAEVLGRTNY DLFPKEQAEF FTKMDRETLA
KGELVEVPEE TITTANGDRI LRVKKIPLFD NQGKERFLLG IAEDITERKQ LEEKLLQSQK
MEAIGQLAGG VAHDFNNILM VILGYGSILL NEGALPARQK EQVEQIMNAA DKAAKLTSDL
LAFSRKQVIK PATMNLNDII LHVEKFLSRI IGEDVQLKAR LAPRELQVDV DRGQIEQVLI
NLATNARDAM PKGGLLTIET SSLQIDEAFV QANGIGAPGP YAVISISDTG VGMDEQTRRR
IFEPFFTTKI VGKGTGLGMS IVYGIIQQHN GFVNVYSEPQ LGTTFRIYLP FSEKSADRAL
EPQAPDTPPG GVETILVVED EPDLRLLLQN ILSGAGYRVL LAENGQVAVE QYAAGARGEI
ALVLMDMIMP GMSGKEACHA IRAIEPAAKV LYTSGYTMDI IKSRDLLEEG TELLMKPVRP
LELLKKVREM LDR
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