| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3461 |
|---|
| Symbol | |
|---|
| ID | 6780323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 3973793 |
|---|
| End bp | 3974932 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642769455 |
|---|
| Product | alanine racemase |
|---|
| Protein accession | YP_002140250 |
|---|
| Protein GI | 197119823 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0787] Alanine racemase |
|---|
| TIGRFAM ID | [TIGR00492] alanine racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGTC GTCCTACAGT TGTCGAGATA GATCTTGCCG CATTGCGGCA CAATTTCTCC
CTGGTTCAAA AGCGGGTCCC CGAAGGGTGC GGGCTTTTGG CCGTGGTTAA GGCGGACGCC
TACGGGCATG GCTTCCAGTA CGTTTCGGAA GAGCTGGAGA AGCTCGGTGT CGACGCCTTC
GCCGTCGCCT TCCTGGCCGA AGGGGTGCAG CTGCGCATGA GCGGCATCAC CCGGCCGGTG
CTGATTCTCG GCGGGATCTA CCCCGGCGAG GAGAGGCGCT GCATCGGCCT CAATATCTCC
ACCGCGCTTT TCTCGCTGGA GCAGGCCGCG GCGCTGGACC AGGCCGCGCT GGAGATCAAG
TGCTACCGGA AGGCGCACAT CCATCTCAAA GTCGACACCG GGATGGGGAG GCTCGGGGTT
CCCTACCACG AGGTCCCCGA GTTCCTCGCC AAGCTGAAGC AGTTCAAGAA CCTGGAGCTG
GAGGGAATAT TCTCCCACTT CGCCAGCGCC GACGAACTCG ACCCCGAAGG GATCGCCTTT
ACCAAACTGC AGGCCGAGCG TTTCAACGCC GCCGTCGAAG AGGCGCGCCG GCAGGGATAC
GCGCCCACCT ATGTGCACGT CGCCAACAGC GCCGCCATCC TCACGCAGGA TCTCCCTTAC
TGCAACCTCG CTCGCCCCGG CATCATTCTG TACGGCGCGC TCCCCTCCGG CGACTTCGAG
GGGCAGGTCC CGTCGCAGCC GGTGATGCGC CTGAAGAGCC GGGTGGCGAT GCTCAAGTGG
GTCGAGCCCG GCACCAGCAT CAGCTACGGC AGGCGCTACG TGGCGGCCGA GCGCGCCCTC
ATTGCCAGCG TCCCGGTAGG CTACGCCGAC GGCTATTGCC GCAGCCTCAC CAACAAAGGC
GAGGCCCTGA TAAGGGGGCA GCGGGCGAAG GTAGCCGGCA CCGTCTGCAT GGACTGGATC
ATGCTGGACG TCACCAACGT AAAAGGGGTC GCGGTAGGCG ACGACGTGAC GCTACTGGGT
CCCGATCCCA TGGGGGACTG CATCAGTGCC GAGGAGATGG CCGAGAAAGC CGGGACCATA
CCGTACGAAG TCCTCTGCGG CATAGCCACC CGCCGCGTGC GCAGGGTGTA TCTCGGTTAG
|
|---|
| Protein sequence | MDSRPTVVEI DLAALRHNFS LVQKRVPEGC GLLAVVKADA YGHGFQYVSE ELEKLGVDAF
AVAFLAEGVQ LRMSGITRPV LILGGIYPGE ERRCIGLNIS TALFSLEQAA ALDQAALEIK
CYRKAHIHLK VDTGMGRLGV PYHEVPEFLA KLKQFKNLEL EGIFSHFASA DELDPEGIAF
TKLQAERFNA AVEEARRQGY APTYVHVANS AAILTQDLPY CNLARPGIIL YGALPSGDFE
GQVPSQPVMR LKSRVAMLKW VEPGTSISYG RRYVAAERAL IASVPVGYAD GYCRSLTNKG
EALIRGQRAK VAGTVCMDWI MLDVTNVKGV AVGDDVTLLG PDPMGDCISA EEMAEKAGTI
PYEVLCGIAT RRVRRVYLG
|
|---|
| |