Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_1106 |
Symbol | |
ID | 6781084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | - |
Start bp | 1277565 |
End bp | 1279382 |
Gene Length | 1818 bp |
Protein Length | 605 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642767092 |
Product | TPR repeat-containing protein |
Protein accession | YP_002137922 |
Protein GI | 197117495 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000356395 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGTACA CGCGCTCTAC CCAAAAGCAC CTCCTGGTGT TTCTGATTTT GGCCCTCGTG GGCCTCGCGG CCTACGGCAA TACCTTCTCC GTCCCGTTCC AGTTCGACGA CGACGCCTAC ATCGTTAACA ACCCCGCCAT CAAGGATTTC AACGCCTTCA TATCACCGGG CACCGTCACT GGAGGAGCAG AGCTCTCACC GACCGCCATC CCGCCTGCAC TGCGGGTCGC TTTCATGACG CGCATCGTGG GTTACCTTTC GCTCGCAGTC GACTACCACA TACACGGCCT GCAGGTCGCC GGGTACCATA TCGTCAATCT TGCACTGCAT ATCATTAACG CATGGCTCGT GTACCTGGTG CTGGGGCACC TGTTCGGGGT CAGGGGGAAG GACGAGCTCG AAGAAGGGTC CGCCGGGATA AGGCCACTGC CACTGATCGG GGCACTACTG TTTCTTTGCC ATCCGATCCA AACCCACGCG GTCACCTACG TCACGTCGCG CTTCGTCCTC CTGGCCTCAT TCTTCTCATT GCTCGCCTTG ACCTCCTACC TCGGCTTTCG CGAGGCCCAC AATGGCTCCC GAGCGAAGTT CTACCTCGCC CTTTGCGTCG TCTCCGCCTC GCTGGGCATG CTGACCAAGG AATTCACCTT CACCCTCCCC TTCGTCATCG CGCTTTACGA GTTCTCCTTC TTCCCCGGCA CCTTTCGCGA CCATCTGCGG AAGGTCTGGC CGGTTGCGCT TGCCGTTCCC ATCATCCCCG GTCTCATCTT CCTCCAGAAA GGGCAACTCA CCGCCCTCGG CGGCACCATG CGCACCCTCA CCGCCGCGGA CTCGTCCGGC ATCGGAAGGC TCGACTACCT GCTGACCCAG TTCAACGTGG TGGCAGGCTA CCTGCGCTTG CTGCTCTTCC CTTTGGGGCA GAACGTCGAC CACGACTTCG CGGTGCAGCA CAACCTTGCC GCTCCAGCCG TCCTCCTCCC GCTTTTGCTG CTGCTATGCC TGTTCGGCTG GGCTGCCGTC GGGTACGTCC GTTCCCTGCG CGCCGGGGAC GCCGCAGCGA GGGTGATCCC TTTCGGCATC CTCTGGTTTT TCATGACCTT ATCGGTCGAG TCAAGCATCA TCCCTCTCGG AGAGTTGTCC GCGGAGTACC GGCTTTACCT CCCCTCCCTT GGGGTAATCA TCGTGCTGTG TTGGCTCGCT GACCGGGCAT GCCTGCGTCT GTCGGCGGGA AGAAGGGCTC GGTTCGCGGC TGCCCTTGTC GTCATCGGGA TGCTCGGTAC GCTGACCATC CTGCGCAACA GCGTGTGGCA AAGCGAAATT TCATTGTGGC GGGACGCGGT GAAAAAGAGT CCGGCGAAGC TGAGGCCCCA TCAAAACCTG GCGCTCTATT ACGGGAAGGC AGGACGGTTG GAAGAAGCGA GACAGGAACT GCAGCAGGCG ATCGCCATCA AACCGGACGA CTTCGAACTG CACAACAACC TGGGCATCGT CTATCGGCAA CAGGGGAACC TCGATGCCGC GATCCTGGAG TACGAGCGCG CCCTGCAGCT CGAACCCGCC GATGCGATGG CGCGCTACAA CCTTGGCAAC GCCTACCTGG GACGGGGAAG GTACCAGGAG GCGCTTGAAC AGTACCAGTC ATGCCTCAAA CTGATCCCGG ATTACGACGA TCTCCACAAC AACATGGGCA TCGTCTACAA CAAAGCCGGA CAAAGCGACG CCGCGATCAA GGAGTTCCAG GAGGCCCTGC GCCTCAATCC GGCAAACGCA CATGCCAGGA GGAACCTGGA AAGCAGCATG AACCGGGCGA CGAGGTGA
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Protein sequence | MTYTRSTQKH LLVFLILALV GLAAYGNTFS VPFQFDDDAY IVNNPAIKDF NAFISPGTVT GGAELSPTAI PPALRVAFMT RIVGYLSLAV DYHIHGLQVA GYHIVNLALH IINAWLVYLV LGHLFGVRGK DELEEGSAGI RPLPLIGALL FLCHPIQTHA VTYVTSRFVL LASFFSLLAL TSYLGFREAH NGSRAKFYLA LCVVSASLGM LTKEFTFTLP FVIALYEFSF FPGTFRDHLR KVWPVALAVP IIPGLIFLQK GQLTALGGTM RTLTAADSSG IGRLDYLLTQ FNVVAGYLRL LLFPLGQNVD HDFAVQHNLA APAVLLPLLL LLCLFGWAAV GYVRSLRAGD AAARVIPFGI LWFFMTLSVE SSIIPLGELS AEYRLYLPSL GVIIVLCWLA DRACLRLSAG RRARFAAALV VIGMLGTLTI LRNSVWQSEI SLWRDAVKKS PAKLRPHQNL ALYYGKAGRL EEARQELQQA IAIKPDDFEL HNNLGIVYRQ QGNLDAAILE YERALQLEPA DAMARYNLGN AYLGRGRYQE ALEQYQSCLK LIPDYDDLHN NMGIVYNKAG QSDAAIKEFQ EALRLNPANA HARRNLESSM NRATR
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