Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_0277 |
Symbol | |
ID | 6783103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | + |
Start bp | 334026 |
End bp | 336461 |
Gene Length | 2436 bp |
Protein Length | 811 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642766246 |
Product | homocysteine S-methyltransferase |
Protein accession | YP_002137104 |
Protein GI | 197116677 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase [TIGR02370] methyltransferase cognate corrinoid proteins, Methanosarcina family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.357222 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTTTTA TGCAGGCGGT TAAAGAGCGG GTGCTGGTTC TGGACGGCGC CATGGGGACC ATGCTGCAGG AACGCGGGCT GAAGCCGGGG CAGTCCCCGG AGGAGATGAA CCTCACCGCA GCCGACGTGG TCGCCGGGGT GCACCAGGCT TATCTGGACG CCGGCGCCGA CATCATCGTC ACCAACACCT TCGGCGGGAC CAAGGCGAAG CTGGAACATT ACGGCCTCGG CGACCAAGTG GCGCGCATCA ACGCCGAGGC GGTGAGGATC GCCCGCGAGG TGGCTGGCGA AAAGGCCTAC GTGGCAGGTT CCATCGGCCC CACCGGCCGC TTCCTGGAGC CGGTCGGCGA CATGAGCTTC GACGAGGCAG TCTCGCTTTT CCGCGAGCAG GCACAGGCGC TCGTCGACGC CGGCTGCGAC CTGATCAGCT TCGAAACCTT CCTCGACATC AAGGAGATCC GCGCCGGTGT CATCGCGGTG CGCGAGATCT CCAAGGAGAT CCCGGTCATC GCCATGCTCA CCTTCGAGGA GAAGGGGAGA AGCGTCCTCG GCACCCCGCC CGAGGCTGCC GCCATCACCC TGGAGGCGGT GGGCGCGACC ATCGTCGGCT CCAACTGCGG CTTAGGCCCT GAAGGGATCT ACCAGATCCT CTCCGGCATG AGGGAGGTCA CCGCGCTCCC GCTCATCTCC CAGGCGAACG CGGGGCTCCC GATCCTCAAG GACGGAGTCA CAATCTTCCC GGCGACCCCG GACGAGATGA CTTCCTACCA CGACCGGCTG ATCGAACTCG GCGTCCGCAT CATCGGCGGC TGCTGCGGCA CCACCCCCGC CCACATCGCC GCCATCAAGA AAGCGCTCGC CGCGAAGCAG ACTCCCTTCG TCCCCAAGAA GGAGGACGGC ACCACCTGGC TCTCCAGCCG CGGCAGCTTC GCCGCAGTCG GCTCCGCCCA TCCGGTGGCG CTCATCGGCG AGCGCATCAA CCCGACCGGC AAAAAGCTCT ACTCGCAGGA ACTCAGGGAA GGGAAGGTGA GCTACATCCG GCGCGAGGCG CTGGAGCAGA CCGGGCTCGG CGCGACGCTT CTCGACGTGA ACGTCGGCAC CCCGGGGATC GACGAGCCGG CCGCCATGGA ACGCGCCGTC TTCTGCATCA CCGGCGCAGT CCAGACGCCG CTGGTACTCG ACTCATCCTC CCCTGCCGCC CTGGAGGCGG GGCTTAAGGC CGCCGACGGC AAGGTGCTCA TCAACTCGGT GAACGGCGAA GAAAAGAGCC TCGCCGCCGT CCTCCCCCTG GCCAAGAAGT ACGGCGCGGC GCTGGTCTGC CTCACGCTGG ACGAGGCGGG GATCCCTGCG GAGGCTGCGG GGCGGGTCGC CGTCGCCGAG AAGATCGCCG CTGCCGCTAA GGCCGCAGGG GTGAAAAGAA GCGATCTCGT GGTCGACTGC CTCACCCTGA CGGTGAGCGC CGAGCCCAAG GGGGCGCTGG TGGCGCTGGA AGCGGTGCGC CAGGTGAGCG CGCTCGGGCT CAACACGACG CTCGGCGTTT CCAACATCTC CTTCGGCCTT CCCTGCCGCC CCCTCATCTC CTCCACCTTC TTCTCCTTGG CCATGGCCGC CGGGCTCACC TCGGCCATCG TCAACGTGAA GGAGGCGCCG ATGATGGCGG CCTGGAGAAG CTCCATGGTG CTGCTGGAAA AGGACGTCAA CGCGGCCTGT TACATCGAGG CCTACAAGGG GCAGGCGGTC GGCGCCACGG TGGAGCCAGC CGCTGCCGCC GGCGCAACCG GAACCCGGGT CGCAGCCGTC GAGCCGGAAG GTGTCCGCGG GCGCCTGGCC AAGGCGGTCA TCAACGGCGA AGCGGACAAC GTGGTGGCGC TGGTGGAAGA GGCGCTGGCC GAGGGGCTGA CCCCGATGCA GATCAGCTCC GAGGCGCTCC TGGTCGGGCT CGACGAGGTG GGAAAGCGTT TCGGCTCCGG TGAATTCTTC CTGCCGCAGG TGATGGTCTC AGCCGACACC ATGAAGACCG CTTTCGCCCG GCTGAAGATG GAACTTTCCA CCGGCGGATT GCAGAGCATC GGCAAGATCC TGATGGCGAC CGTCGAGGGG GACATTCACG ACATCGGCAA GAACATCCTG GTCACCCTCC TGGAGAACAA CGGTTTCGAG GTGATAGATC TGGGCAAGAA CGTCCCGGCC GACCGCATCC TGTACGAGGC GCGTGCCCAC CAGGTGGATG CCGTCGGGCT CTCCGCGCTG ATGACGACGA CCATGGCGCA GATGGACAAG GTGGTCAAAC TCCTGAAGGC CGAAGGGGTG AAGAGCTTCA CCATGGTCGG CGGGGCCGTG GTCACCCAGG AATACGCCGA CGAGATCGGC GCCGACCTCT ACGCCAAGGA CGCCATGGAG GCGGTAGCCC GCATCAAGAA ACTGCTGGCA AAATAA
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Protein sequence | MPFMQAVKER VLVLDGAMGT MLQERGLKPG QSPEEMNLTA ADVVAGVHQA YLDAGADIIV TNTFGGTKAK LEHYGLGDQV ARINAEAVRI AREVAGEKAY VAGSIGPTGR FLEPVGDMSF DEAVSLFREQ AQALVDAGCD LISFETFLDI KEIRAGVIAV REISKEIPVI AMLTFEEKGR SVLGTPPEAA AITLEAVGAT IVGSNCGLGP EGIYQILSGM REVTALPLIS QANAGLPILK DGVTIFPATP DEMTSYHDRL IELGVRIIGG CCGTTPAHIA AIKKALAAKQ TPFVPKKEDG TTWLSSRGSF AAVGSAHPVA LIGERINPTG KKLYSQELRE GKVSYIRREA LEQTGLGATL LDVNVGTPGI DEPAAMERAV FCITGAVQTP LVLDSSSPAA LEAGLKAADG KVLINSVNGE EKSLAAVLPL AKKYGAALVC LTLDEAGIPA EAAGRVAVAE KIAAAAKAAG VKRSDLVVDC LTLTVSAEPK GALVALEAVR QVSALGLNTT LGVSNISFGL PCRPLISSTF FSLAMAAGLT SAIVNVKEAP MMAAWRSSMV LLEKDVNAAC YIEAYKGQAV GATVEPAAAA GATGTRVAAV EPEGVRGRLA KAVINGEADN VVALVEEALA EGLTPMQISS EALLVGLDEV GKRFGSGEFF LPQVMVSADT MKTAFARLKM ELSTGGLQSI GKILMATVEG DIHDIGKNIL VTLLENNGFE VIDLGKNVPA DRILYEARAH QVDAVGLSAL MTTTMAQMDK VVKLLKAEGV KSFTMVGGAV VTQEYADEIG ADLYAKDAME AVARIKKLLA K
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