| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1967 |
|---|
| Symbol | |
|---|
| ID | 6482905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 1923247 |
|---|
| End bp | 1924848 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642737334 |
|---|
| Product | cyclic diguanylate phosphodiesterase (EAL) domain protein |
|---|
| Protein accession | YP_002041084 |
|---|
| Protein GI | 194442294 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.352201 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 80 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAG CACAACGGAT CATCAATCAT TATCGCCGTA ATCGTTTCAT TGTTTGCACG
ATTTGTGCAC TGGTCACGCT CATTCTTACG CTGAGCATCC GATTTATTTC GGAGCGGAAC
TTAAATCACC ATCGCACGGT TGCATTCGCG AATCATGCCG TTGATGCGCT GGATAATGTG
CTGCATCCTC TCCTGGTCGG ACGAAACATA CTGCTACCCT TGCTTGAGCT TCCGTGCGCG
ACCGCGCATT TGCCGTTGCG TAAGCAAGCC GCCCGCCTAC AAACCATTCG TTCTATCGGG
CTGGTAAAAG AGGGAATTCT CTACTGCTCA AGCATTTTTG GCGCCCGTAA TACTCCCATA
CGCCAGCTTC AGCCCGATCT TCCCGCAGCT GGCGATCTGC TGCTACTTTC CACGGACCAA
TCGTTACTCA AGGGAAGCCC GATCCTCATT CAGTGGTATC CCGCCTCTGC CGATGGCCAG
GATGGCGTGA TGGAAATTGT GAATATTGAC TTGCTGGCGA CTATGCTACT TGAGCCGCAG
CAGCCGCAAA TTACCAGCGC CAGCCTGACG GTCGGCAAAC GGCACCTGTT ATATGGTCGG
GGCGTGGTCG ATACTCTTCC GGAATTAAAA AAAGATGAAG AGCGTTACCA GCTTTCATCG
CGGCATTTCC CTTTTACTAT CAGCGTCAGC GGGCCGTCGG CAGGCGTACT GGCGTTCAAA
CATCTCCCGA CGCAGTTACC GCTGGCCGTA TTGCTTAGCC TGTTGATCGG TTATATCGCC
TGGCTGGCAA CGGCCAGCAG AATGAGCTTT TCCTGGGAGA TTAATCTGGC CCTTGCCGAA
CGGGAGTTTG AGCTATTTTG TCAGCCGTTG CTTAATGCCC GCACGCAGCA GTGTACCGGC
GTTGAGATCC TGTTACGCTG GAACAACCCG CGTCAGGGCT GGATCTCACC GGATGTTTTT
ATTCCTATCG CCGAGGAACA TAACCTGATA GCGCCGCTGA CCCGCTATGT GATTGCGGAA
ACCATTCGGC AGCGGCACTA CTTCCCCATC AACCATCAGT TTCATATCGG CATCAATGTA
GCGGCAAGCC ATTTCCGACA CGGCGTGCTT CTCAAAGATC TTAATCAGTA CTGGTTTAGT
GCGGAACCTG TTCAGCAACT GGTGCTGGAG CTCACGGAAC GCGACGCGTT GCTTGACGTT
GATTACCGCC TGATGCGCGA GCTGCATCGT AAAGGCGTGA AGTTAGCCAT CGATGATTTT
GGCACAGGAA ACAGCTCGCT CTCCTGGCTG GAAAAACTGC GGCCGGATAT TTTGAAAATC
GATAAATCCT TCACCGCCGC CATCGGTACC GATGCGGTCA ATTCAACGGT GACCGATATT
ATTATCGCGC TGGGGCAAAG ACTGAATATT GAACTGGTGG CGGAAGGGGT CGAAAACCAG
ACACAGGCAC AGCATTTGCG CCAGCATGGC GTGCAAATGT TACAGGGCTA TCTCTATGCG
AAGCCGATGC CCATTAGCGA ATTTCCACAG TGGCTGGCGG GCAGCGCGCC GCCGCCCGCC
CGGCATAACG GACAGATTAT GTCCGCGATG CCGCATCTAT AG
|
|---|
| Protein sequence | MQTAQRIINH YRRNRFIVCT ICALVTLILT LSIRFISERN LNHHRTVAFA NHAVDALDNV
LHPLLVGRNI LLPLLELPCA TAHLPLRKQA ARLQTIRSIG LVKEGILYCS SIFGARNTPI
RQLQPDLPAA GDLLLLSTDQ SLLKGSPILI QWYPASADGQ DGVMEIVNID LLATMLLEPQ
QPQITSASLT VGKRHLLYGR GVVDTLPELK KDEERYQLSS RHFPFTISVS GPSAGVLAFK
HLPTQLPLAV LLSLLIGYIA WLATASRMSF SWEINLALAE REFELFCQPL LNARTQQCTG
VEILLRWNNP RQGWISPDVF IPIAEEHNLI APLTRYVIAE TIRQRHYFPI NHQFHIGINV
AASHFRHGVL LKDLNQYWFS AEPVQQLVLE LTERDALLDV DYRLMRELHR KGVKLAIDDF
GTGNSSLSWL EKLRPDILKI DKSFTAAIGT DAVNSTVTDI IIALGQRLNI ELVAEGVENQ
TQAQHLRQHG VQMLQGYLYA KPMPISEFPQ WLAGSAPPPA RHNGQIMSAM PHL
|
|---|
| |