| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2909 |
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| Symbol | |
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| ID | 6462085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 2994429 |
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| End bp | 2995895 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642729055 |
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| Product | RNA methyltransferase, TrmA family |
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| Protein accession | YP_002019669 |
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| Protein GI | 194337875 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.501194 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGACG GGAATACTTT CAGGAAGGGT GATACTATTG AGTTGACGGT CACGGATCTG
GCGGAGAAGG AGCAGTGTTT CGGGCGGCTT GACAACGGCA TGGCGGTGAT GGTGAGCGGG
ATGCTTGCGA TTGGTGACCG GGTTTCGGCT AAAATAAAAA AGGTGAAGCA GCGCTACATT
GAGGCGATTG CGGTTGAGGT GCTTGAAGCG TCGCCGGACA GGACGGAGCC GGTTTGCAGT
TATTTTGGCG TTTGCGGGGG GTGCAAGCTG ATGCATATCC GTTATGATGC GCAGCTTGTG
TACAAGCAGA AAAAGGTGAA GGATGCGCTT GAGCATCTCG GGGATTTTGT TGCTCCCCCG
GTTATGGAGG CGCTTGCTTG CCGTGAGCCG TTTCATTACC GGAACAAGAT TGAATTCTCC
TGCTCAAATA TGCGTTACCT GCTGCCGGAG GAGCTTTCGA TGGAGACTCT TGCCCGCCCG
AAGGAGTTTG CGCTCGGCTT TCACACTCCC GGCAATTTTG AGAAGGTGAT CGATATCGAC
TATTGCTACC TGGCCAAGGA GTCGATGAAC AGGGTGCTTG CCCTGACGCG TGAATTTGCG
CTTGCCAACG CTCTTGTTCC TTATGGGGCC AAGGCGCATA CCGGTTTTTT GCGGAACCTT
GTGGTGCGGT TCAGTGAAAA CCGTGAAGAG GTTATGGTTA ACCTGGTGAC CTCCTGGTAT
GATGAGCCGC TGATGGAGCG TTACCGGATG CATCTTGAGT CCGGGATGGC CGGGCAGAAG
ATGACGGTGG TCAACAATGT GACCGAGCGC AAAAATACGG TTGCTACCGG GGAGAAGGAG
TTTACGCTCA GCGGAGCGGG ATACATTACC GAGCGTCTTG GCGCTCTTGA TTTCAGGATA
TCGGCGAACT CTTTTTTTCA GACGAATTCG TCACAGGCGG AGCTGCTTTA CCAGAGCATT
CTGGAGGTTG CAGGGTTGAG GGCGGAGGAT ACGGTGTATG ACCTCTATTG CGGGACAGGT
ACGATAACCC TCTATCTGGC AAAGCATTGT CGTCAGGTTG TGGGGCTTGA GGTGGTTGAG
AGTTCCATCA ATGATGCGCG TTCCAATGCG GCGTTTAACA GCATTGACAA TGTGGCTTTT
TTCCAGGTTG ATCTCAAGGA TTTTCAGGGT ATGCTCGATC TGCTCGGAAG TTATGATGCT
CCGGGGGTGA TTATTACCGA TCCGCCTCGC GCGGGTATGC ACCCGAAGGC GCTCTCTACG
ATGCTGCGGC TGAGGCCAAG GAGGATTATC TATGTGAGCT GCAACCCGGC AAGCCTTGCC
CGTGATGGCA AGGAGATCTG CCTTCAGGGT TACAAATTGC TATCGGTGCA GCCGGTTGAC
ATGTTCCCGC ATACCAGCCA CATCGAGAGT GTTGCCTGTT TTGAGCGTGT TGGGTTGGTA
ACGGTCACTC CGGCTCCGCA GAGCTGA
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| Protein sequence | MEDGNTFRKG DTIELTVTDL AEKEQCFGRL DNGMAVMVSG MLAIGDRVSA KIKKVKQRYI
EAIAVEVLEA SPDRTEPVCS YFGVCGGCKL MHIRYDAQLV YKQKKVKDAL EHLGDFVAPP
VMEALACREP FHYRNKIEFS CSNMRYLLPE ELSMETLARP KEFALGFHTP GNFEKVIDID
YCYLAKESMN RVLALTREFA LANALVPYGA KAHTGFLRNL VVRFSENREE VMVNLVTSWY
DEPLMERYRM HLESGMAGQK MTVVNNVTER KNTVATGEKE FTLSGAGYIT ERLGALDFRI
SANSFFQTNS SQAELLYQSI LEVAGLRAED TVYDLYCGTG TITLYLAKHC RQVVGLEVVE
SSINDARSNA AFNSIDNVAF FQVDLKDFQG MLDLLGSYDA PGVIITDPPR AGMHPKALST
MLRLRPRRII YVSCNPASLA RDGKEICLQG YKLLSVQPVD MFPHTSHIES VACFERVGLV
TVTPAPQS
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