| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2161 |
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| Symbol | |
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| ID | 6462196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 2243989 |
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| End bp | 2245311 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642728357 |
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| Product | WD40 domain protein beta Propeller |
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| Protein accession | YP_002018981 |
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| Protein GI | 194337187 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000041437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCGAT TTTTTAAACA TGTTTTCTCT GGCATTTTTG TGGCGCTCTT TTTTCTGCTC
GTATTTCCTC TGCACCTCTG TGCAGGCGAG ACGGGAGAGA CAGGAGAGTA TATAGCCATC
CGTAAAGAGG GGTCTGGCAA TATTGTTCTT GTACTCGACA AGCTCCATGC AGATGGAAAA
AAGGAGTCCC GATTTGGGCA GGGTCTTGAT ACCGTTATGC ATGATGGTCT CGATTTTGCA
GGGATATTCT CCATGCTTCC TCCACCTCTT AATATTATGG ACAACAGTGA CAAAAAGAGT
GTTGTCATCA ATTTTGGAGC ACTGACTTCG GTAGGTGCAG AGGTCTATGC AGGAGGTACG
GTTACGATAA AGTCAGGAAT GATCAATCTG GATATGTCGG TCTACGAGAC TGCTGGCTCC
AGATTGCTTT TAAGGAAAAC CTATACGGGC AAGGAGGATG AACTTCGTTC AATCGGTCAT
GCGTTCTGCG CTGATCTTGT TGCACTTCTT ACCGGTAAAT CTTCTGTATT TGGCAGTAAA
ATTGTTTTTG TTTCGAATAA TACCGGGTAT AAAGAGATCT ATCAGTGTGA TTTTGATGGA
TATGGAGTTG AGCAACTGAC CAATTCGAGA TCGATTACCA TGAATCCATC TCTTTCTCCG
GATGGAAGAC ATCTTGCCTA CATTGATTTT TCTTCTGGCC GTTCTGTTCT TCGTATCCAG
AACCTTGGTG AGAGGAAAAC TGCGTCAGTT GGCAATAGTG GTGTCAGTAT TGACCCTGCC
TGGAGAAGTG GCAGCGAGGT GGCAGCAACA CTCTCCTTTG ATGGCAATCA GCAGATTTAT
CTTGTTAAAA CTGATGGCAC ACTTTCGCGA AGGCTTACCA ATAGCAGGAG TATTGATATT
TCTCCTGCGT TTTCTCCCGA TGGCAGCAAG ATGGCATTTG TCTCTTCAAG AAATGGTCTT
CCCCAGATCT TTATCCAGGA TATTCAGTCT GGTCAGGTAA AAAGATTGAC GTTCAGTGGC
CGTTATAATA CCCAGCCATC ATGGTCTCCT GCCGGAGATA AAATTGCCTA TACAACATGG
GAAAAGAATG GTGAAATAAA TATATTTACC GTGAGTGCTG ATGGCTCAGG GCTCATGCAG
TTAACACGGC GATGCGGAGA GAACATCTGC CCCTCGTGGT CTCCGGATGG ACAGATGATA
GTGTTTTCGT CTAACCGCTC AGGAAAACAG AAACTTTACA CAATGGATTC GAAAGGGGAT
AAACAGAGGG CTTTATTGCA GGTTGATGGT CAGCAGACGC AGCCATCCTG GTCTTTACGT
TAG
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| Protein sequence | MVRFFKHVFS GIFVALFFLL VFPLHLCAGE TGETGEYIAI RKEGSGNIVL VLDKLHADGK
KESRFGQGLD TVMHDGLDFA GIFSMLPPPL NIMDNSDKKS VVINFGALTS VGAEVYAGGT
VTIKSGMINL DMSVYETAGS RLLLRKTYTG KEDELRSIGH AFCADLVALL TGKSSVFGSK
IVFVSNNTGY KEIYQCDFDG YGVEQLTNSR SITMNPSLSP DGRHLAYIDF SSGRSVLRIQ
NLGERKTASV GNSGVSIDPA WRSGSEVAAT LSFDGNQQIY LVKTDGTLSR RLTNSRSIDI
SPAFSPDGSK MAFVSSRNGL PQIFIQDIQS GQVKRLTFSG RYNTQPSWSP AGDKIAYTTW
EKNGEINIFT VSADGSGLMQ LTRRCGENIC PSWSPDGQMI VFSSNRSGKQ KLYTMDSKGD
KQRALLQVDG QQTQPSWSLR
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