| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2055 |
|---|
| Symbol | pyrB |
|---|
| ID | 6462834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 2146414 |
|---|
| End bp | 2147349 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642728249 |
|---|
| Product | aspartate carbamoyltransferase catalytic subunit |
|---|
| Protein accession | YP_002018879 |
|---|
| Protein GI | 194337085 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0540] Aspartate carbamoyltransferase, catalytic chain |
|---|
| TIGRFAM ID | [TIGR00670] aspartate carbamoyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00545936 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGATT TGAAGCACCT TACTGGATTA TGCAATATTC CGGCCAGCAA CATCACCAGC
ATCCTTGATA TGGCTGCCGG TTATAAAAAG AAGTTGATCA CCCCCTGCCC CTCTTTTGAA
CCATCCCTTC AGAATAAACG CATTGCACTG GTTTTTTTTG AAAACTCAAC CCGTACCCGA
TTTTCTTTTG AGATAGCAGC ACGACACCTT GGCGCAGGCA CGCTGAACTT CAGTGCATCG
TCAAGCAGTG TCAGCAAGGG GGAAAGCCTG AGTGATACCA TCAAAAATCT TGAGGCCATG
CAGGTGGATG CCTTTGTTCT TCGTCATCCC TCTTCCGGAG CTGCAGATCT CATAACCAGA
ATAACCTCAA AAAACGTGAT CAATGCCGGA GACGGATCGC ATGAGCATCC GACACAGGCG
TTGCTCGACA TGTTTACGCT CCGCGAATAT TTTGGAACAA TTGATGGGCT CAAAGTGATC
ATTATTGGCG ATGTGCTGCA TAGCAGGGTC GCCCGTTCAA ACATTTACGG CCTCATCACT
GCCGGCGCCG AGGTTGGTAT CTGCTGCCCG GTCACCCTCA TGCCTCCCGA TGCTGACCAG
CTTGGCATCA CTCTCTTTAC CGACCTTGAC CGTGCCATTG CCTGGGCCGA TACAGCAATC
GTGCTTCGAC TGCAACTTGA ACGAGCTACG GGAGGATACC TGCCCTCGCT GGAAGAGTAT
TCTGTCCATT ATGGTCTGAC CGATGAGCGC CTTGAACGGG TACAGAAACA TCTGCTGGTA
CTTCATCCCG GCCCGATAAA CCGGGAAATT GAAATAGCAA ACAATGTGGC CGACCGCATA
CAGCCTCCGG GCTATTCAAA AAGCATGCTG CTTGAACAGG TAACTAACGG AGTCGCTGTC
CGCATGGCAG TGCTGAACAC CCTGCTAACC CTGTAA
|
|---|
| Protein sequence | MSDLKHLTGL CNIPASNITS ILDMAAGYKK KLITPCPSFE PSLQNKRIAL VFFENSTRTR
FSFEIAARHL GAGTLNFSAS SSSVSKGESL SDTIKNLEAM QVDAFVLRHP SSGAADLITR
ITSKNVINAG DGSHEHPTQA LLDMFTLREY FGTIDGLKVI IIGDVLHSRV ARSNIYGLIT
AGAEVGICCP VTLMPPDADQ LGITLFTDLD RAIAWADTAI VLRLQLERAT GGYLPSLEEY
SVHYGLTDER LERVQKHLLV LHPGPINREI EIANNVADRI QPPGYSKSML LEQVTNGVAV
RMAVLNTLLT L
|
|---|
| |