| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0094 |
|---|
| Symbol | |
|---|
| ID | 6460961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 98123 |
|---|
| End bp | 98530 |
|---|
| Gene Length | 408 bp |
|---|
| Protein Length | 135 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 642726397 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002017067 |
|---|
| Protein GI | 194335273 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2402] Predicted nucleic acid-binding protein, contains PIN domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000167961 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTATT TCCTTGATAC ATCCTATCTG GTTGCCCTGA CTCACAGTAG AGATCAATTT
CATCAAGAGG CTGTAAGCAT AAGTAAAACA CTCATACAGC CGATCCGACT TGTTACAACT
TCAGCGGTTC TCATGGAGTT TGCCAACATG CTTTCTTCTC CTCATCTTCG AGGCAAAGCG
TTCAATTATA TTCAATTACT GAAGAATGAC ATTCATACCG AAATTGTTTG TGTTTCTGAG
GAGCAGTTTG AATCAGGGTT GATAATGTTC GGGAAATATC ATGACAAAGA ATGGGGTTTG
GTGGATTGCC TATCATTCCT TGTCATGAAA GAAAAAGGAA TTACACTCGC CTTGACTTCT
GATGACCATT TTGAACAGGC CGGTTTTACG ACTTTATTAC AACTCTGA
|
|---|
| Protein sequence | MIYFLDTSYL VALTHSRDQF HQEAVSISKT LIQPIRLVTT SAVLMEFANM LSSPHLRGKA
FNYIQLLKND IHTEIVCVSE EQFESGLIMF GKYHDKEWGL VDCLSFLVMK EKGITLALTS
DDHFEQAGFT TLLQL
|
|---|
| |