Gene Ppha_0016 details

Gene Information

• Locus tag: Ppha_0016
• ID: 6463156
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelodictyon phaeoclathratiforme BU-1
• Kingdom: Bacteria
• Replicon accession: NC_011060
• Strand: -
• Start bp: 17373
• End bp: 19322
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 642726320
• Product: DNA gyrase, B subunit
• Protein accession: YP_002016992
• Protein GI: 194335198
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01059] DNA gyrase, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00028541
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGGAAG ACGATATCCT TTCCCTCCCG ACACCTCCGA CAGAAGCGAG CTACGGAGCA 
ACCAACATCC AGGTTCTTGA TGGCATCGAG CATGTCCGCA TGCGCCCTGC CATGTATATT 
GGCGATATTT ACAGCCGTGG CCTTCACCAT CTTGTCTACG AAATTGTCGA CAACTCGATT 
GATGAAACGC TTGGTGGCTT CAACGATTAT ATCTTTGTCT CCCTGAATCC TGATGGATCG 
GTTACGGTGA TTGACCATGG TCGGGGTATT CCGGTGGATA TTCATCCGGA AAAGCAGAAA 
TCGGCGCTTG AGCTGGTCAT GACGGTCATT GGCGCTGGCG GCAAGTTCGA CAAGGGGGCA 
TACAAGGTCT CCGGCGGTCT GCATGGTGTT GGCGCTTCGG TGGTCAATGC CCTTTCGGAG 
TGGTGTGAGG TCGAGGTCTC CCGCGACGGC AAGCTCTATT TCCAGCGCTT TGAGCGGGGC 
GTTCCACAGG GTGATGTCAA AGTTATCGGC AGTTCAGACC ATCGCGGTAC AAAAACCACC 
TTTCTGCCTG ACCATCTTAT TTTCAAGACT ACCGAGTTAC GCAAGGATAT CATTATCGAC 
CGTATGCGGG AGCTTGCATT CCTCAACAAA GAGCTCTCGA TAACGGTGCA GGATACTGAA 
GGGTTCCAGG AAATCTTCCA TTATGAAGGC GGAATCAAGG AGTTTGTCCA GTTTACCGAT 
CAGAACCGCC TCAACCTGCT CAAGGAGCCG ATCTATCTTT ACGGCGAACG GGATAGTACC 
ATTGTTGAAA TAGCGCTCCA GTATAATGAT ACCTATCAGG AGAATGTCTT CAGCTATGTC 
AACAACATCA ATACGCATGA GGGAGGCACA CACGTTACCG GCTTCCGCAA GGCTCTGACC 
AGAACACTTA ATGCCTATGC GCAGAAGAAC GATTTGCTGA AAAACCTGAA ATTATCCCTG 
ACTGGTGATG ATTTCAAGGA GGGGCTGACT GCAGTTATCT CCGTCAAGGT GGCTGAACCG 
CAGTTTGAGG GGCAGACCAA GACCAAGCTT GGAAACTCAG AGACGCAGAG CATTGTCGAA 
ACCGTCATCA ATGAGCAGTT GTCGGAGTTT GCCGAAAGCA ATCCGAATGT GCTCAAGATG 
ATTATTGAGA AGGTGAAGGG TGCAGCCATG TCGAGAGAGG CGGCCCGAAG GGCAAAGGAG 
CTTACCCGCA GAAAATCGGT GCTCGAAAGC TCTGGCCTTC CAGGAAAACT TGCTGACTGT 
TCGATCAATG ACCCGGAGCA TTGTGAACTC TATATCGTCG AGGGTGATTC GGCAGGCGGC 
AGCGCCAAGC AGGGTCGCGA CCGGAGCTTC CAGGCAATTC TTCCTCTTAA AGGTAAAATT 
CTGAATGTGG AGAAAGCCCG GCTGCACAAA ATGCTTGAGA ACGAGGAGAT CAAGACCATC 
ATTCTTGCTC TTGGCACCAG TTTCGGTGAA GAGGAGTTTT CGGTTGAAAA ACTGCGGTAT 
GGCAAAATCA TCATCATGAC TGATGCTGAT GTTGACGGAG CACACATCAG AACTCTGCTC 
CTGACCTTCT TCTTCCGCTA CATGCGTGCC CTGATTGAAG CTGGCAGAGT CTTTATTGCC 
CAGCCTCCGC TTTACCTGGT TAAATCAGGC AAAGATCAGC AGTATGCATG GGATGATGAG 
GAGCGCAACA GTATTTCAGA TGGCATGAAG AAGATGCAGA AGGGTAAGGC GAATATCCAC 
ATCCAGCGAT ACAAGGGTCT TGGAGAGATG AATCCTGAAC AGCTCTGGAG TACCACCATG 
GACCCGGCTC ACCGCTCACT CCTGCTGGTC AACGTGGAAA ACGCCATGGA AGCAGACCAG 
GTATTTTCCA CGCTTATGGG AGACAAGGTT GAACCCCGGA GAGAATTTAT CGAGAAAAAT 
GCACGTTACG TCCGCCGCTT AGATGTCTGA 

 

Protein sequence

MQEDDILSLP TPPTEASYGA TNIQVLDGIE HVRMRPAMYI GDIYSRGLHH LVYEIVDNSI 
DETLGGFNDY IFVSLNPDGS VTVIDHGRGI PVDIHPEKQK SALELVMTVI GAGGKFDKGA 
YKVSGGLHGV GASVVNALSE WCEVEVSRDG KLYFQRFERG VPQGDVKVIG SSDHRGTKTT 
FLPDHLIFKT TELRKDIIID RMRELAFLNK ELSITVQDTE GFQEIFHYEG GIKEFVQFTD 
QNRLNLLKEP IYLYGERDST IVEIALQYND TYQENVFSYV NNINTHEGGT HVTGFRKALT 
RTLNAYAQKN DLLKNLKLSL TGDDFKEGLT AVISVKVAEP QFEGQTKTKL GNSETQSIVE 
TVINEQLSEF AESNPNVLKM IIEKVKGAAM SREAARRAKE LTRRKSVLES SGLPGKLADC 
SINDPEHCEL YIVEGDSAGG SAKQGRDRSF QAILPLKGKI LNVEKARLHK MLENEEIKTI 
ILALGTSFGE EEFSVEKLRY GKIIIMTDAD VDGAHIRTLL LTFFFRYMRA LIEAGRVFIA 
QPPLYLVKSG KDQQYAWDDE ERNSISDGMK KMQKGKANIH IQRYKGLGEM NPEQLWSTTM 
DPAHRSLLLV NVENAMEADQ VFSTLMGDKV EPRREFIEKN ARYVRRLDV