Gene Rpal_5002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_5002 
Symbol 
ID6412694 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp5386295 
End bp5387242 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content64% 
IMG OID642714885 
ProductTRAP transporter solute receptor, TAXI family 
Protein accessionYP_001993966 
Protein GI192293361 
COG category[R] General function prediction only 
COG ID[COG2358] TRAP-type uncharacterized transport system, periplasmic component 
TIGRFAM ID[TIGR02122] TRAP transporter solute receptor, TAXI family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.117483 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGCCA GATTGTTTGG TGTCGCCGCG GCTGCGGTCA TTGTCCTGGC GGCGCCGCAA 
GCCCGCGCTC AGCAGTTCGT CAACGTGCTG ACCGGCGGCA CCTCCGGCGT CTACTATCCG 
CTCGGCGTCG CGATAGCCAA GATTTATGGC GAGAAGATTC CCAACGTCAA AGCTCAGGTC 
CAGGCCACCA AGGCATCGGT CGAGAACCTC AACCTGCTGC AGCAGGGGCG CGGCGAGATC 
GCGTTCTCGC TCGGCGACTC GCTGAAAGCT GCCTGGGACG GCGACGCCGA AGCCGGCTTC 
AAAGCCAAGC TCGACAAGTT GCGGGTGATC GGCGCGATCT ATCCGAACTA CATCCAGATC 
GTTGCGACGT CCGAAAGCGG GATCAAGACG CTCGCCGACC TGAAGGGCAA GAGCCTGTCG 
GTCGGCGCGC CGAAATCCGG CACCGAGCTG AATTCGCGCG CGATCCTGAA GGCCGCCGGC 
ATGGACTACA AGGATCTCGG CAAGATCGAA TATCTGCCGT TCGCCGAATC CGTCGACCTG 
ATGAAGAACC GCCAGCTCGC CGCCACGCTG CAGTCGGCCG GCCTCGGCGT CGCCTCGTTG 
AAGGACCTGT CGAACTCGTC CGACATCAAC GTCGTGGCGG TGCCGAAGGA GGTCGTCGAC 
AAGATCGGCC CGCCGTTCGT CGCCGAGACC ATCCCGGCTG GCACCTATAA GGGGCAGGAC 
AAGGACGTGC CGACCGCCGC GGTGATCAAC TATCTGGTGA CCTCGAGCGC CGTGTCCGAC 
GACCTGGCGT ATCAGATGAC CAAGCTGATC TACGAATCGC TGCCCGAACT CGCCAGCGCC 
CACGCCGCCG GCAAGGGCAT CAAGCTCGAA ACCGCCGCCG CCGGCAGCCC GGTCCCGCTG 
CACCCCGGCG CGATCAAGTA TTTCAAGGAA AAGGGCGTGC TGAAGTAG
 
Protein sequence
MKARLFGVAA AAVIVLAAPQ ARAQQFVNVL TGGTSGVYYP LGVAIAKIYG EKIPNVKAQV 
QATKASVENL NLLQQGRGEI AFSLGDSLKA AWDGDAEAGF KAKLDKLRVI GAIYPNYIQI 
VATSESGIKT LADLKGKSLS VGAPKSGTEL NSRAILKAAG MDYKDLGKIE YLPFAESVDL 
MKNRQLAATL QSAGLGVASL KDLSNSSDIN VVAVPKEVVD KIGPPFVAET IPAGTYKGQD 
KDVPTAAVIN YLVTSSAVSD DLAYQMTKLI YESLPELASA HAAGKGIKLE TAAAGSPVPL 
HPGAIKYFKE KGVLK