Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4538 |
Symbol | |
ID | 6412222 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4887472 |
End bp | 4889604 |
Gene Length | 2133 bp |
Protein Length | 710 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642714419 |
Product | outer membrane autotransporter barrel domain protein |
Protein accession | YP_001993508 |
Protein GI | 192292903 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1404] Subtilisin-like serine proteases |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGGGC ATCATTTCGG GGGCGGCATG AGTAATTCGG AAGCGATCGA CAACACGACC GCAAAACTGC GTCTTGCGCA GAGCAGTTCT CTGCTCGCGC TCGCGCTCTT GATCGGCTCC GCGCCGGCGC AGGCGGCGGA CACCGATTGG GGCTGGCTGG CGATCGGCGC CCCCGCCGCC AAGGCACAGG GGTGGACCGG CAAGGGTGTG GTGATCGGCG TCGTCGACAC CGGCATCGAC TTCAGTCACC CCGCATTGAG CGGCCGCGCC TTCGACTACA ACTATGGCTC ATTCGTCGCC GGGAGCAATC ATCCTCATGC GACACATGTC GCCGGCATCA TCGGCGCCAC AGACATCAAC CGGGGCATGG AGGGCGTAGC CCCCGATGTT CGGTTCTCAT CGATGAAGAT CTTCACGGGA GCCGGCGGAT CCTATCTGGG CGACGCGGCC GTCGCGGACG CCTACGACGG CGCCATCGGG AGCGGCGTCC GCATCTTCAA TAATTCATGG GGGTCGTCGG ACTCGATCGC AAATTTCACG TCGCGCGAAG AGCTGCTGGC TCACGAGCCC CTGCTGGTCG GCGCGTTCAC GCGCGCCGTC AACGCCGATG CGGTCCTGGT ATGGTCGACC GGCAATGACG GTCGCAGTCA GCCGAGCTGG CAGGCAGCCG CGCCCTACTA CATCCAGGAG CTCAAAGCTA ACTGGATTGC GGTAACGTCG GTGGGAGAGA ATGGAACGAT CGCTTCCTAC GCCAACGCCT GCGGCGTCGC CAAGGCGTGG TGCCTCGCCG CCCCGGGCGG AGATTTCAAT CCCGGCATTT ATTCGACCAT CCCCGGAAAC GACTACGGCT ACATGTCCGG AACCTCGATG GCGGCGCCCT ACGTGACAGG CGCGACAGCG ATCGCAAGGC AGATGTTCCC CAAGGCGAGC GGGGCGCAGC TCGCCCAGAT CGTGCTGCAA ACCAGCCGTG ACATCGGCGC GCCCGGCATT GATGACGTTT ATGGCTGGGG CCTGCTTGCG GTCGATAATA TCGTCGACAC GATCAACCCG CGTGGCGCGG CGTTGTTCGC GAGTGCAGCC TGGGGCCGCT TCACCACCCT GTCGGCGATC GGCAACACGG TGCTCGACCG CATCTCCGAT CTGCGCAACG GCCGGGGCGA TGTCGTCACG GCCCCGCTCG CCTTCGCCGG GCAAAACGGT GCGTTCAGCC AGAGCGGCTC GAACCCGCGC AATGCCTATG CGGCGGATCT GGCGGCGGCC CCGCAGCCCT CCCCGCTCGG CTTCGGCAGT GTGTGGGCTC GCGGGCTGGC CGGACGGGCC ACATTGTCGG GCAGCGCGAG CTCGCCGCAG ACGACGGCCG ATATCAGTGG CGGGCTGCTC GGCTTTGACT TGGTCAACAA TCAGAACCTG CTGGTCGGCA TCGCGGGCGG CGGATCGAAT ACCAATCTCA CCGCGTCGGG CATCAGCGAC AAGGCCGGTG CGCAGGCTTG GCATGTGCTC GGCTATGCGG CCGCGATGTA CGGCCCGGCC TTCGTCAATG TCGCCGGCGG TTGGAACAGC TTCGATCAGT CCTATCAGCG TCGTGTCATC CCCGGCACCG CGGGCACCGT GTTCGCGTCG ACGATCAGCG CGGCGCAGTC GTCGTCCACC GACGTGGCCT ATTTCTTCCA GGGACGTGGC GGCTGGACTT TCCAGACTGA GGTCGGCCGG ATCGAGCCTT ACGTGCACGG CGCGACCCGC AACCAGAGCT TCGGCGGCTT CAGTGAAACC AACGCCAGCA TCTTCAGCCT GTCGGTGCCC TCGGCGAGTT TATCGGAGGC CGAATATGGT GCCGGCGTGC GCTGGGCCTG CGCGCCGATC AAGACGGTGG ACCAACGCGT CGCGGTCGCG CCGACCATCG ACCTCGCCTA TGTCCGCTTC ACCAACGATG GCCCGATCCA GGTCGAGACC AATTTGTTGG GCACCTCCGT GGTGGGCCAG ACCGCAGCAC TCGGCGCCGA TGCGATCCGC GTCGCTGCCG GGCTGTCGCT GACGAGTTTG GCCGGAATTT CCGGCAGCTT CGGCTATACC GGCACCGTCC GCGACGCAGC AACTGCACAC ACCGTCTCCG GCGGTCTGAG CATCAAGTTC TGA
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Protein sequence | MQGHHFGGGM SNSEAIDNTT AKLRLAQSSS LLALALLIGS APAQAADTDW GWLAIGAPAA KAQGWTGKGV VIGVVDTGID FSHPALSGRA FDYNYGSFVA GSNHPHATHV AGIIGATDIN RGMEGVAPDV RFSSMKIFTG AGGSYLGDAA VADAYDGAIG SGVRIFNNSW GSSDSIANFT SREELLAHEP LLVGAFTRAV NADAVLVWST GNDGRSQPSW QAAAPYYIQE LKANWIAVTS VGENGTIASY ANACGVAKAW CLAAPGGDFN PGIYSTIPGN DYGYMSGTSM AAPYVTGATA IARQMFPKAS GAQLAQIVLQ TSRDIGAPGI DDVYGWGLLA VDNIVDTINP RGAALFASAA WGRFTTLSAI GNTVLDRISD LRNGRGDVVT APLAFAGQNG AFSQSGSNPR NAYAADLAAA PQPSPLGFGS VWARGLAGRA TLSGSASSPQ TTADISGGLL GFDLVNNQNL LVGIAGGGSN TNLTASGISD KAGAQAWHVL GYAAAMYGPA FVNVAGGWNS FDQSYQRRVI PGTAGTVFAS TISAAQSSST DVAYFFQGRG GWTFQTEVGR IEPYVHGATR NQSFGGFSET NASIFSLSVP SASLSEAEYG AGVRWACAPI KTVDQRVAVA PTIDLAYVRF TNDGPIQVET NLLGTSVVGQ TAALGADAIR VAAGLSLTSL AGISGSFGYT GTVRDAATAH TVSGGLSIKF
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