| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4200 |
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| Symbol | |
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| ID | 6411884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4502500 |
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| End bp | 4503942 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642714082 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001993171 |
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| Protein GI | 192292566 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.599667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCGCA ATACCGGTCC CCGATTGACC CACTTCTGGC GCGGCACGGC GATCGCCCTG
TCCGCAGCCG TGGCTCTGAC GCTGATCCCG AGCTGGACCG CGGTTCACGC AAGCGACTAC
CGTGCGGCGC CTGTCCCGCC GGCATCGTCC GGCCTGAATG CCCAATCGAT TTCGCTCGGC
ATCGGCAAGT CAATGGTGAT CGACCTGCCG CGCGACATCA AAGACGTGCT GGTTGCGGAT
CCGAAGATCG CCAATGCGGT GGTCCGTTCT GCGCAGCGCG CCTACATCAT CGGCGCCGCC
GTCGGCCAAA CCAACATCGT GTTCTTCGAT TCCGCCGGCC GCCAGATCGC CGCCTACGAC
ATCGCCGTGA CGCGCGACCT CAACGGTCTC CGGACCGCAC TCAAGCAGAC CTTGCCCAAT
GCCGAAATCC AGGTCGAAGG CCTCGGCGAC GGCGTGATGC TCAACGGCTG GGTGACCTCC
CCGATCGACG CGCAGCAGGC GTACGACCTC GCCGTTCGGT TGGTGGGCGA AGATAAGAAG
GTCGTCAACA ACATCGCGGT CCGCGGCCGC GATCAGGTGA TGCTGAAGAT CACCGTCGCC
GAAGTGCAGC GGGACATCGT CAAGCAGCTC GGCGTCGATC TCAGCGCCAA CATGGCCTAC
GGCACCGCCG TGGTGAACTT CAACAACTCC AATCCATTCA CCCAGTCGGG CGGTCCGCTG
GTTTCGAGCA ACGCGCTGAC CACGAAATTC GGATCGCTGC CGTCCGTCAC TGCAACCCTG
CGGGCGATGG AAAGCGCTGG CGTCGTGCGT ACCCTCGCCG AACCAAACCT GACAGCAATC
TCCGGCGAGC CGGCGACCTT CCTAGCCGGC GGCGAATTCC CTGTGCCGAG CGGCGTGACC
TGCACCAACG GCGTCTGCAC TCCGTCGGTG ACGTTCAAGA AGTTCGGTAT CCTGCTCAAC
TTCACCCCGG TGGTGATGAC GGCAGGCCGG ATCAGCCTGA AGGTGATGAC TGAAGTCTCT
GAGGTGTCGA GCGACAACTC CGTCATCATC AGCAACATGT CGGTGCCGTC GATCAAGACC
CGCCGCGTCG AGAGCACGGT GGAAATCCCC TCCGGCGGCT CGCTGGCGAT GGCCGGCTTG
ATCCAGGAGC AGACCAAGCA GGCGATCAAT GGCATGCCCG GCGCAGCGCA ACTGCCGATC
CTCGGCACGC TGTTCCGCAG CCGCGACTAC ATCAACCGCC AAACCGAGCT GATGGTGCTG
GTGACGCCCT ATGTGGTGCG CGCCGTGGCG CAGAAGGATC TGTCACGGCC GGACGACGGC
TTCGCCGACG CCTCGGATCC GCAGTCGGAC CTGCTCGGCA GCATCAACAA GCTCTACGGC
GTTCCCGGCC GGACCGAGCC CGCCCGCACC TATCGCGGCC GGTTCGGTTT CATCACCGAC
TAG
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| Protein sequence | MTRNTGPRLT HFWRGTAIAL SAAVALTLIP SWTAVHASDY RAAPVPPASS GLNAQSISLG
IGKSMVIDLP RDIKDVLVAD PKIANAVVRS AQRAYIIGAA VGQTNIVFFD SAGRQIAAYD
IAVTRDLNGL RTALKQTLPN AEIQVEGLGD GVMLNGWVTS PIDAQQAYDL AVRLVGEDKK
VVNNIAVRGR DQVMLKITVA EVQRDIVKQL GVDLSANMAY GTAVVNFNNS NPFTQSGGPL
VSSNALTTKF GSLPSVTATL RAMESAGVVR TLAEPNLTAI SGEPATFLAG GEFPVPSGVT
CTNGVCTPSV TFKKFGILLN FTPVVMTAGR ISLKVMTEVS EVSSDNSVII SNMSVPSIKT
RRVESTVEIP SGGSLAMAGL IQEQTKQAIN GMPGAAQLPI LGTLFRSRDY INRQTELMVL
VTPYVVRAVA QKDLSRPDDG FADASDPQSD LLGSINKLYG VPGRTEPART YRGRFGFITD
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