Gene Rpal_3896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3896 
Symbol 
ID6411576 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp4183993 
End bp4184628 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content66% 
IMG OID642713778 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001992869 
Protein GI192292264 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGACTC TGACCACCGC TTCCAAAGGC GGACGTCCGC GCAAAAGCGA TGTCGAGGCG 
AAGTCGCTTC ACATCATCGA GACGGCGTCG CGACTGTTCG CGCAGCAGGG CTTCGCTGCG 
ACCTCGGTCG AGCAGGTCGT GGCCGCATGC GGCGTCGGCA AGGACACCGT GTATCGACGC 
TTCCCATCGA AGCTGGCGTT GTTCGAAGGG GTGGTCGAGC ATGCGCGGGT GCAGACGCTG 
GCGCACTTCC AGACCACGAT GGCGAGCCAG ACGGGGGATG CGCTGACGCA ACTTCGCGCG 
GCGGCACGCT GGCTCCTTGC CGTCAACGTC GATCCCACGC TGATCGCTTT CAAGCGCATC 
GCTTTCAGCG AGGCGATCGT GGTCGGTCAG GCCGTTGCCA GCCGGACCGA CGATCCGATC 
ATGGACCGGT TGCTGTCGCT GATCAGCGAG GCGCAGAAGG CCGGCGCCCT CGCCCGCGGC 
GACGTGCGCT TTCTCGCGAG CCAGCTTCTC AACAGCATCG CGATGGGGCC GATGATCGAG 
GCGATGCTGG GCGGGACGAC CTATGCGTCG ACCCGCGCCC AGAACGCTTA TTTCGACAAG 
GCCTGGGCGC TGTTTCTCGA CGGCGCCGGC GCCTGA
 
Protein sequence
MPTLTTASKG GRPRKSDVEA KSLHIIETAS RLFAQQGFAA TSVEQVVAAC GVGKDTVYRR 
FPSKLALFEG VVEHARVQTL AHFQTTMASQ TGDALTQLRA AARWLLAVNV DPTLIAFKRI 
AFSEAIVVGQ AVASRTDDPI MDRLLSLISE AQKAGALARG DVRFLASQLL NSIAMGPMIE 
AMLGGTTYAS TRAQNAYFDK AWALFLDGAG A