| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3526 |
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| Symbol | |
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| ID | 6411200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3772353 |
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| End bp | 3773984 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642713404 |
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| Product | indolepyruvate/phenylpyruvate decarboxylase |
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| Protein accession | YP_001992501 |
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| Protein GI | 192291896 |
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| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
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| TIGRFAM ID | [TIGR03394] indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0476584 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGACAC TTGCGACCGC GCTGCTCGAC GCCCTCAAGG ATCATGGTGC CCGAGAGATT
TTCGGCATTC CCGGCGATTT CGTGCTGCCG TTTTTCAAGG TGATCGAAGA GAGCGGCACG
CTGCCGTATT TCACCATGAG CCACGAGCCG GCGGTCGGCT TCGCGGCCGA TGCGGCGTCG
CGCTATCGCG GCAGCATCGG CGTCGCGGTG GTGACCTACG GGGCCGGCGC GTTCAACCTC
GTCAACTCGA TTGCCGGCGC CTATGCGGAG CGCTCGCCGG TGGTGGTGAT CGCCGGCGCG
CCGGGCGCGC GCGAGCGCAC CAGCGGCTAT CTGCTGCATC ATCAGGTCCG CACCGTCGAT
TCCCAACTCG CGGTATTCAA GGAAGTCACT TGCGATCAGG CCGTGCTGAG CGATCCGGCG
ACCGCGCCCG CGGAGATCGC GCGGGTGCTG CGGAGCGCGC TCGAATTGTC GCTGCCGGTG
TACATCGAAT TTCCCCGCGA CATGGTCGAC GCCAAGGTCG ACCCGGTGCC GAAGCTGCCG
CGGCGCGAGG CCGATATCGG CGCGCGGGAC GAGTGTGCCG AAGAAATCCT GGATCGGATC
GCCAGGGCAA AGTCGCCGGT GATGGTGGTG GACGTCGAAA TCCGCCGCTA CGGCGTCGAG
CAGCAGGTCG CCGCGCTGGC CCGCAAGCTC GGCCTGCCGG TGGTGACGAC GTTCATGGGC
CGCGGCCTGC TCGAAGGCGA CGACGACGTG GTGGCTGGCA CCTATCTCGG CGCGGCTGGT
GATCCGGACC TGTCGGCGCT GGTCGAGGGC GCCGATCTGG TGCTGATGTT CGGTGTCATC
CTGTCCGATA CCAACTTCGC GCTGTCCTCG AACATGACCG ATCCGCGCCG CACCGTGCTG
GCGACTGGGC GCGAGGTGCA GATCGGCCAC CACGTCTATC GCGACCTGCC GCTGGCTGAC
CTGATCGCCG GTCTCGATGC CCACGCCTCG CAGCATCCAC CGCGGCCGCG CAATGTCGGT
AAGGGGATGG CCTATCCGCG TGGGCTGACG CTCGACGCGT CGCCGATCGC ACCGTCGGAT
ATCGCCACCG CGATCAACGA TCTGTTCGAC CGCCACGGCA AGATGCCGAT GACCGCCGAT
ATCGGCGATT GCCTGTTCAC CGCGATGGAG ATCGACAACA CTGCGCTGGC GGCCCCGGGA
TACTACGCAG GCATGGGGTT CGGCGTGCCC GCCGGCGTCG GCGTTGCCGC GACCGGCCTG
CGGCCGCTGG TGCTGGTGGG CGACGGTGCG TTTCAGATGA CCGGCTGGGA GCTCGGCAAC
TGCAAGCGCT ACGGGCTCGA TCCGATCGTG GTGCTGTTCA ACAATTGCAG CTGGGAAATG
CTGCGGGTGT TCCAGCCGGA ATCCAAGTTC AACGATCTGG ACGACTGGCA CTTTGCCGAC
ATCGCGCATT CGATCGGCGG CTTCGGCGAG CGGGTGACGA CGCGCGCCGA ACTCGCCGCG
GCGCTGCAGC GCGCGGTCGA GCGGCGCGGG GTGTTCTCAC TGATCGAAGT GATGTTGCCG
CGTGGCGTTA CCTCGCACAC GCTGGCGCGG TTCGTCACCG GCTTCAAGGC GGCGCGTGAA
CGGATGAAGT GA
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| Protein sequence | MPTLATALLD ALKDHGAREI FGIPGDFVLP FFKVIEESGT LPYFTMSHEP AVGFAADAAS
RYRGSIGVAV VTYGAGAFNL VNSIAGAYAE RSPVVVIAGA PGARERTSGY LLHHQVRTVD
SQLAVFKEVT CDQAVLSDPA TAPAEIARVL RSALELSLPV YIEFPRDMVD AKVDPVPKLP
RREADIGARD ECAEEILDRI ARAKSPVMVV DVEIRRYGVE QQVAALARKL GLPVVTTFMG
RGLLEGDDDV VAGTYLGAAG DPDLSALVEG ADLVLMFGVI LSDTNFALSS NMTDPRRTVL
ATGREVQIGH HVYRDLPLAD LIAGLDAHAS QHPPRPRNVG KGMAYPRGLT LDASPIAPSD
IATAINDLFD RHGKMPMTAD IGDCLFTAME IDNTALAAPG YYAGMGFGVP AGVGVAATGL
RPLVLVGDGA FQMTGWELGN CKRYGLDPIV VLFNNCSWEM LRVFQPESKF NDLDDWHFAD
IAHSIGGFGE RVTTRAELAA ALQRAVERRG VFSLIEVMLP RGVTSHTLAR FVTGFKAARE
RMK
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