| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1126 |
|---|
| Symbol | |
|---|
| ID | 6408782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 1198114 |
|---|
| End bp | 1200150 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642711027 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001990144 |
|---|
| Protein GI | 192289539 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4930] Predicted ATP-dependent Lon-type protease |
|---|
| TIGRFAM ID | [TIGR02653] conserved hypothetical protein
[TIGR02688] conserved hypothetical protein TIGR02688 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.596948 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACCG CCCCTGTACG CGACGCTCTC GACGACAAGG TCAACCGGAC CTTCGCTGGC
AAAGTTGTTC GGAAAGACCT CGTCCGGAAG GTCAAGGTCG GTGCCAACGT GCCGGTCTTC
GTCCTCGAGT TTCTGCTCGG AAAATACTGC GCGTCGTCGG ACGAGATGGC GATCCAGATG
GGCCTGCAGG TGGTCAACGA CACGCTGGCG AACAACTACA TCCGCTCCGA CGAGTCGATG
AAGGCGCAGA GCAAGGTCAA GGAAAAGGGT AGCTGGACCT TCATCGACAA GGTCAAGGTT
CGCCTGGTCG ACTCCGATTA TTGGGCGGAG TTGAGCAACT TCGGGAACAA GTTCGTACAC
ATCCAGAATC AGTACGTCAG GGACTATGAG CGTCTGCTGA CCGGGGGTGT CTGGGCCCAG
GTGGACATGC GCTTTGAGTA CGACGAGGAG GGCAAGGGGA AAAACCCCTT TTGGATCGAG
AAGCTCACGC CGATCCAGAT CGCGGCTTTC GACCTCGCCG AGTACCAGCG GCTTCGCGCG
GAGTTCACGA CGGACGAGTG GATCAACCTC ATCCTGCGTA GCATGGGCTA CGAGCCCGGC
GAGATGACGA AGCGCTTGAA GCTCCTCTTC CTGACGCGTC TGATCCCGTT GTGCGAGCGC
AACTACAATC TGGTCGAACT GGGCCCGCGC GGTACCGGCA AAAGCTATGT CATCCAGGAA
GTTTCTCCGT ACGCCGCCCT CATGACCGGC CCGACGACGG TCGCGAACCT GTTCGGGCAC
ATGGGCGGAC GCGCGAAGGG CCTCGTTCAG ATCTGGGACG TCGTCGGCTT CGACGAAGTC
GCGGATCTCG AGAAGATGCC CAAGGAGGTC ATCACCACGA TGAAGACCTA CTGCGAATCC
GGGTCGTTCC AGCGTGGTCA GGAGGCCGCG TCCGGAGAAG CCGGTGTCGC CTTGTTCGGC
AACACCCAGC AGCCGATCGA CGTCATGGTC CAAACCGGAC ACCTGTTCGA ACCGATGCCC
GAGGTTATCC GGGACGACAT GGCGTTCATC GACCGCCTGC ACTTCTACCT GCCTGGCTGG
GAAATCCCCA AGATGCGGAA CGACCTCTTC ACGGACCACT ACGGTTTCGT GGTGGATTTC
CTGGCTGAGG CGCTGCGCGA ATTGCGGCGG CACAATTTCA CGGAGATCAG CGACCGGCAC
TTCACGATGG GATCCCACCT GATCACCCGC GACCGAAAAG CGGTCAAGAA GACCGTGTCG
GGGTTGATGA AGATCATTCA TCCGAGCGGC GAGGCCACCC AGGACGAGAT CGCCGAGCTC
CTGGAGTTCG CCATGGAGGG CCGACGCCGG GTGAAGGAGC AGCTGAAGAA GATGGGCTCC
TTTGAATACT ACCACACGTC CTTCAGCTAC ACCCTCAACG ACACCGGCGA AGAGCGGTTC
GTGGGCGTGC CTGAGCAGGG CGGCCGCAAC ATGATCTCGG CCGATCCTCT CCCGCCGGGC
AGCGTCTACA CGGCGGCCGT CGCGCAGGAC GGCACGGTCG GCATGTACCG CATCGAGGTT
TCGGTCTCGT CGGGATCCGG AAAACTGAAG ACGGCCGGCG GCGTCAACGG CGTGACCAAG
GAATCGATCA ATCGCGCGTT CAGTTACATG CTCGCAAAGA AGGGGGATCT TTCCATCGCC
CGCGAACTCG ACGTCTCCGA CCTTCACGTC GAGGTCATCG ACCTCATGAA CAACCGCGTC
GAAGGCGAGA TCGGGCTCGG CTTCTTCATC GCGGCGTTCT CCGCACTCAA AAAGGCTCCT
CCATCTGCCG CCATGCTGGT AGTCGGCGAT CTTAGCGTTC AGGGTAACAT CAAGGGGCTG
CGATCGCTGG CGGAACCGCT TCAACTCGCC ATGGACAATG GCGCCAAGCG AGCGCTGATC
CCGATCGAGA ACAAACGCAG CTTCCTAGAA GTTACTGGGG ACGTGGTGGA GCACGTCGAT
CCAATCTTCT ATGGAGATCC CAAAACGGCT GCGTTCAAGG CGCTGGGAAT AAACTGA
|
|---|
| Protein sequence | MSTAPVRDAL DDKVNRTFAG KVVRKDLVRK VKVGANVPVF VLEFLLGKYC ASSDEMAIQM
GLQVVNDTLA NNYIRSDESM KAQSKVKEKG SWTFIDKVKV RLVDSDYWAE LSNFGNKFVH
IQNQYVRDYE RLLTGGVWAQ VDMRFEYDEE GKGKNPFWIE KLTPIQIAAF DLAEYQRLRA
EFTTDEWINL ILRSMGYEPG EMTKRLKLLF LTRLIPLCER NYNLVELGPR GTGKSYVIQE
VSPYAALMTG PTTVANLFGH MGGRAKGLVQ IWDVVGFDEV ADLEKMPKEV ITTMKTYCES
GSFQRGQEAA SGEAGVALFG NTQQPIDVMV QTGHLFEPMP EVIRDDMAFI DRLHFYLPGW
EIPKMRNDLF TDHYGFVVDF LAEALRELRR HNFTEISDRH FTMGSHLITR DRKAVKKTVS
GLMKIIHPSG EATQDEIAEL LEFAMEGRRR VKEQLKKMGS FEYYHTSFSY TLNDTGEERF
VGVPEQGGRN MISADPLPPG SVYTAAVAQD GTVGMYRIEV SVSSGSGKLK TAGGVNGVTK
ESINRAFSYM LAKKGDLSIA RELDVSDLHV EVIDLMNNRV EGEIGLGFFI AAFSALKKAP
PSAAMLVVGD LSVQGNIKGL RSLAEPLQLA MDNGAKRALI PIENKRSFLE VTGDVVEHVD
PIFYGDPKTA AFKALGIN
|
|---|
| |