| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0515 |
|---|
| Symbol | |
|---|
| ID | 6408164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 562706 |
|---|
| End bp | 564268 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642710427 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_001989550 |
|---|
| Protein GI | 192288945 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGCG CGGCACAATC TCACGCGGTC CCCGGCTTTC GCCGGAACAT GGTGACGATC
TGCGCCATGA CCGCCACGAT CATGCAGGCG CTCGACACCA CGATCGCCAA CGTCGCGTTG
CCCTATATGC AGGGCTCGCT GTCGGCGTCT CAGGACCAGA TCAACTGGGT GCTGACCTCC
TACATCGTCG CCGCCGCGAT CATGACGGCG CCGGTGGGCT GGATCGCCAA CCGGTTCGGC
CGCAAGCGCA TCTTCATCAT CTGCTCGGCC GGATTCACCA TCGCGTCGGT GATGTGCGGC
CTTGCCCAGG ATATCACCCA GATGGTGGTG TTCCGGCTGC TACAGGGCGT GTTCGGCGCC
GCGCTGGTGC CGCTGTCGCA GGCGGTGATG CTCGACAGCT ACGCGCTGCA CGAGCGCGCC
AAGGCGATGT CGATCTGGGG CATGGGCGTG ATGATGGGGC CGATCATGGG CCCCTCGCTC
GGCGCCTGGC TGACTGAAAC GTACTCCTGG CACTGGGTGT TCTTCGTCAA CCTGCCGTTC
GGCGCCATCA CGGTGCTGGG TCTGGCGATG TTCATGGACG AAACCGATAA GAACCAGGAC
TTGAAGTTCG ACTGGTTCGG CTTCGCGGCG CTCGCGGTCG GCATCGGCGC GATGCAGCTC
GCGCTCGACC GCGGCGAACA GCTCGATTGG TTCAACTCGC CCGAGATCAT CATCGAGTCG
ATCGTCTCGG TGGTCGGGTT CTACTACTTC TTCGCCCACT CCTTCACCAC CGAGCGCCCC
TTCATCCAGT TCGCGATCTT CAAGGACCGC AACTTCGTCG GCGGCGTGGT GTTCATGACG
GTGATGGGGC TGGTTCTGTT CTCCACCATG GCGCTGTCGT CGCCGTTCCT GCAGAACGTC
GAGGGCTATC CGATCATGAC CGCCGGCCTG CTGCTGGCTT CGCGCGGTTG CGGTACCTTC
GTGGCGATGA TGATCGTCGG GCGGATCATG CGCTATATCG AGGCCCGCAC CCTGATCGCC
ACTGGGCTGT CGCTGACCTG CGCGTCGCTC TATGTGATGA CCGGCTGGAC CGATCAGACC
AGCGTGTCGA GCGTGGTGGT GACCAGCATC ATCCAGGGCT TCGGCTTCGG TCTGGTATTC
GTGCCGCTGT CGACGGTGGC GTTCATGACG CTGCCCGGAC ACCTGCGCAC CGACGGCACC
GCGATGCTGA CGCTGGTGCG CAACGTCGCC AGTTCGGTCG GGATCTCAGT GGTGATCGCC
AAACTGTCGT CGGGCACCAC CACGGCGCAC GCCATCCTGT CCGAGCACAT CAACCCGTTC
AACAACGCGC TGCAGATGCC CAACGTCACC GGCATGATCG ATCTGTCGAC CACCACCGGC
AAGGCGATGA TGGACGCGAT CGTCACCATG CAGGCGCAGA TCATCGCATT CTCGCACGAC
TACGCGATGG TGATGTTCCT GACCGCCGCG GCGGTGCCGA TGGCGATCAT CATCGGCTCG
ACTAAGGCGG CGCTACGCAA GCAAAGCGAA GCCCCGGCGG ATCATGCCGC GGTGATGGAG
TAG
|
|---|
| Protein sequence | MAGAAQSHAV PGFRRNMVTI CAMTATIMQA LDTTIANVAL PYMQGSLSAS QDQINWVLTS
YIVAAAIMTA PVGWIANRFG RKRIFIICSA GFTIASVMCG LAQDITQMVV FRLLQGVFGA
ALVPLSQAVM LDSYALHERA KAMSIWGMGV MMGPIMGPSL GAWLTETYSW HWVFFVNLPF
GAITVLGLAM FMDETDKNQD LKFDWFGFAA LAVGIGAMQL ALDRGEQLDW FNSPEIIIES
IVSVVGFYYF FAHSFTTERP FIQFAIFKDR NFVGGVVFMT VMGLVLFSTM ALSSPFLQNV
EGYPIMTAGL LLASRGCGTF VAMMIVGRIM RYIEARTLIA TGLSLTCASL YVMTGWTDQT
SVSSVVVTSI IQGFGFGLVF VPLSTVAFMT LPGHLRTDGT AMLTLVRNVA SSVGISVVIA
KLSSGTTTAH AILSEHINPF NNALQMPNVT GMIDLSTTTG KAMMDAIVTM QAQIIAFSHD
YAMVMFLTAA AVPMAIIIGS TKAALRKQSE APADHAAVME
|
|---|
| |