| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0448 |
|---|
| Symbol | lnt |
|---|
| ID | 6408096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 482968 |
|---|
| End bp | 484578 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642710360 |
|---|
| Product | apolipoprotein N-acyltransferase |
|---|
| Protein accession | YP_001989484 |
|---|
| Protein GI | 192288879 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0815] Apolipoprotein N-acyltransferase |
|---|
| TIGRFAM ID | [TIGR00546] apolipoprotein N-acyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGCGTC GGGGTGTGCT GAGCCGGATC GCCTCGGGCA TCATCCTGGC GTGGGGCTGG
AAACGCGCCG TGATCGCGCT GCTGGCCGGC GCACTCTCCT CGCTGGCCAT GGAGCCGTTC
AACGCCTGGC CGGTTCTGTT CATCACCTTC CCGATCGCGG TGTGGCTGAT CGACGGCTCT
GCGGCCGGGA AGCGGCGCGG CGTGCCGGCT GCGGCGATGG CCGGCTGGTG GTTCGGCTTT
GGTTATTTCG TCCCCGGCCT GTACTGGATC GGCTACGCGT TTCTGGTCGA TGCCGACACC
TTCGCCTGGC TGCTGCCGGC CGCGATCTGT GGCTTGCCGG CCTATCTGGC GCTGTTCACG
GCGCTCGGCT TCGCCCTGGC TCGGCTGTTG TGGCGCCCGG ATAGTCTGCG CATCCTGTCG
CTCGCCGTCA GCCTGACGAT CAGCGAGTGG CTGCGCGGCC ATCTGCTCAC CGGCTTTCCC
TGGAATGCGT TCGGCTACGC CCTGACCGAG CCGCTGGCGC TGGCGCAGAG CATCTCAGTG
ATCGGCATCT GGGGACTGAC CCTGCTGACG GTGGCGATCT TCGCCTCGCC TGCGGCGCTG
ATCGATGGCG GCACCAACGC CAGGCGGCGC TGGGCAGTGC CGGCGATGGC GCTGGGCGTG
CTGGCCGCGA TGGCAGTGTT TGGCGGCATT CGACTCAAAT TGTCGCCGAC CCAGCTCGTC
GACAACGTCC GGCTGCGGAT CATGCAGCCC AACCTGCCGC AGGACGCCCG CTTCAATTAT
TCGGCCAAAG CCGACGTGAT GCAGAAATAT CTGTCACTGT CGGACCGCTC GACAGGGCCA
AAATCGACCG GCGTTCGCGA CGTCTCGCTG CTGATCTGGC CGGAATCGGC GTTTCCGTTC
TTCCTGTCGC GAGAAGCGGA TGCGATGGCG CAGATCGCAG AGCTGTTGCC GAAAGGCACC
GTGCTGCTGA CCGGGGCGGT CCGCCCGCCT GAATTACCGC CGGGGCGCCG GATTACCCGC
GCTTACAATT CGATCTATGC GATCGACCAT GATGGCAGCA TTTTGTCGGT CTACGACAAA
CTCCATCTGG TCCCATTCGG CGAATTTCTG CCGTACCAGA ATCTGATGGA GAAGATCGGC
TTCGTCCAAC TCACCAAGGT GCAGGGCGGA TTTTTATCCG GTGTGGCGCG TCATAACCTC
GAACTGCCCA ACGCCCCGCC GCTGCTGCCG CTGATCTGTT ACGAGGCGAT CTTTCCGGAC
GAAATTGCGA TCGGCAACAA CCGTCCCGGC TGGATGCTGA ATCTCACAAA CGACGGCTGG
TTCGGCATTT CCAGCGGCCC CTATCAACAC CTGCAGCAGG CGCGGATGCG CGCCATCGAG
CAGGGCCTGC CGCTCGTTCG CGCAGCGAAC ACCGGCGTTT CTGCAGTGAT CGATCCGGTC
GGACGGATCG TCGCAGAGCT CGGCCTCGGC CTCGAAGGGG TGCTGGATTC GGGGCTGCCC
GCGCCCGTCG CGCCGACGAT CTATGCGCGG GTCGGCGAAC TTCCTGCAGC CGTGCTGGTT
GCGTTAGTGA TGATGCTTGT ACTATTACGA AAGCGCCCGC CGGGCTCGTG A
|
|---|
| Protein sequence | MTRRGVLSRI ASGIILAWGW KRAVIALLAG ALSSLAMEPF NAWPVLFITF PIAVWLIDGS
AAGKRRGVPA AAMAGWWFGF GYFVPGLYWI GYAFLVDADT FAWLLPAAIC GLPAYLALFT
ALGFALARLL WRPDSLRILS LAVSLTISEW LRGHLLTGFP WNAFGYALTE PLALAQSISV
IGIWGLTLLT VAIFASPAAL IDGGTNARRR WAVPAMALGV LAAMAVFGGI RLKLSPTQLV
DNVRLRIMQP NLPQDARFNY SAKADVMQKY LSLSDRSTGP KSTGVRDVSL LIWPESAFPF
FLSREADAMA QIAELLPKGT VLLTGAVRPP ELPPGRRITR AYNSIYAIDH DGSILSVYDK
LHLVPFGEFL PYQNLMEKIG FVQLTKVQGG FLSGVARHNL ELPNAPPLLP LICYEAIFPD
EIAIGNNRPG WMLNLTNDGW FGISSGPYQH LQQARMRAIE QGLPLVRAAN TGVSAVIDPV
GRIVAELGLG LEGVLDSGLP APVAPTIYAR VGELPAAVLV ALVMMLVLLR KRPPGS
|
|---|
| |