Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0423 |
Symbol | |
ID | 6408071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 453845 |
End bp | 454624 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642710335 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001989459 |
Protein GI | 192288854 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.83571 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACTGAAC GTGTAACGTT GATTACAGGC GCATCGGCCG GGATCGGTGT CGAACTGGCG CGAATTTTTG CAGACAATGC TCATCGGGTG GCCCTGGTGG CGCGGCGTGG CGACCGGCTC GAATCGCTGG CGGCTGAGAT CCGTGCCAAA GGCGGGCCGG AACCGATCGT AATCGCGTGC GATCTCGGTA AGCCCGACGC GGCCGAGCAG ATCATCGCGG CGCTTGCCGC TGCCGGCGTC GAGGTCGAGT ACCTCGTCAA CAACGCCGGA TACGGACTAT TCGGCCGGGC GATGGAGCTC GATCGCGAAA GCCAGCTTGG TATCATCGAC GTCAATAACA GGGCGCTCAC CGATCTGACG CTGCGGTTTG CCGACAGCAT CGCACGGCTT CGCGGCGGCA TCCTCAATGT CGCTTCGATC GCCGGCTTCC TGCCCGGCCC CGGCATGGCG GTGTACTACG CGTCCAAGGC CTATGTGCTG TCGTTCAGCG AGGCGATGCA TCAGGAGCTC GGGCCGAAGG GCGTGCGCGT CACCGCGCTG TGCCCCGGCC CGGTGCAGAC CGAGTTCCAG AACCGCGCCG GTTTCGAGCC GGGTTTCGAC AGCGCCGTGC TCAACGTCAC CCCCGCCGAG GTCGCACGTC AGGCCTATCA GGGACTGATG AACAACAAGC GGATCGTGCT GCCCGGCCTC GGCGTGAAGA TCGTGCCGTT CCTGCTGCGG TTCTTTCCGC GCGGCTTCAT CGCTGCCGCC GTCAGCGGCT TCCAGTTGCG CCGCCGCTGA
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Protein sequence | MTERVTLITG ASAGIGVELA RIFADNAHRV ALVARRGDRL ESLAAEIRAK GGPEPIVIAC DLGKPDAAEQ IIAALAAAGV EVEYLVNNAG YGLFGRAMEL DRESQLGIID VNNRALTDLT LRFADSIARL RGGILNVASI AGFLPGPGMA VYYASKAYVL SFSEAMHQEL GPKGVRVTAL CPGPVQTEFQ NRAGFEPGFD SAVLNVTPAE VARQAYQGLM NNKRIVLPGL GVKIVPFLLR FFPRGFIAAA VSGFQLRRR
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